View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_low_27 (Length: 225)

Name: NF17705_low_27

Description: NF17705

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17705_low_27

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 170; E-Value: 2e-91

Query Start/End: Original strand, 7 - 209

Target Start/End: Original strand, 16292564 - 16292762

Alignment:

Q	7	agcaaaggcataaattatgctcaaatttgaagggtcattagttgaacatagaatgctaagattttgtatcactttgatgagttctattttgctaatgttt	106	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16292564	agcaaagacataaattatgctcaaatttgaagggtcattagttgaacatagaatgctaagattttgtatcactttgatgagttctattttgctaatgttt	16292663	T

Q	107	atgttgtatttgagttgtatatcgtgatgatatatagtaagttgtttttggtcaaattagaaagtattttggagtttaaggtgaatgtatgtgtccaagc	206	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16292664	atgttgtctttgagttgtatatcgtgatg----atagtaagttgtttttggtcaaattaaaaggtattttggagtttaaggtgaatgtatgtgtccaagc	16292759	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 21 - 125

Target Start/End: Complemental strand, 38395482 - 38395372

Alignment:

Q	21	ttatgctcaaatttgaagggtcattagttgaacatagaatgctaagattttgtatca------ctttgatgagttctattttgctaatgtttatgttgta	114	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	38395482	ttatgctcaactttgaatgggttttagttgaacttagaatgccaagattttgtgttagtgttactttgacggattttattttgctaatttttatgttgta	38395383	T

Q	115	tttgagttgta	125	Q
		\|\|\|\|\|\|\|\|\|\|\|
T	38395382	tttgagttgta	38395372	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]