View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_4 (Length: 517)
Name: NF17705_low_4
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 30272239 - 30272741
Alignment:
| Q |
1 |
cctttggcagataagggttctcttcatcatcaaaggccttcctcagaatatacttctcaattcgtccttcatcnnnnnnnatctggacgttttaaacaaa |
100 |
Q |
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| T |
30272239 |
cctttggcagataaggattctcttcatcatcgaaggccttcctcagaatatacttctcaattcgtccttcatctttttttatctgcacgttttaaacaaa |
30272338 |
T |
|
| Q |
101 |
ccagcttagttagtacccgcgaaaacatttcctgttttccaagatttgtacaagaaacactaaaaacaactattatgttttcggtatttcctgtagaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30272339 |
ccagcttagttagtacccgcgaaaacatttcctgttttccaagatttgtacaagaaacactaaaaacaactattatgttttcggtatttcatgtagaatt |
30272438 |
T |
|
| Q |
201 |
attgaatcaacagagtaacactaattactcataccattttattctcaggatcaatattcattgcaacattgataaactccttgtccaaaaatggaactct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272439 |
attgaatcaacagagtaacactaattactcataccattttattctcaggatcaatattcattgcaacattgataaactccttgtccaaaaatggaactct |
30272538 |
T |
|
| Q |
301 |
ggcttctaaaccccaagcaaaggttgatttatttgctctctggcaatcatattggtggagtgctttgatctgcatatgnnnnnnnnnnnnnntacatcta |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30272539 |
ggcttctagaccccaagcaaaggttgatttatttgctctctggcaatcatattggtggagtgctttgatctgcatatgaaaaagtaaaaaaatacatcta |
30272638 |
T |
|
| Q |
401 |
ttaatca-tatacttcaacttcttttattattttctaacattgaacttcataattctaaattaaatgaccttgcggcatgtttcttggtggaactcttcc |
499 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272639 |
ttaatcattatacttcaacttcttttattattttctaacattgaacttcataattctaaattaaatgaccttgcggcatgtttcttggtggaactcttcc |
30272738 |
T |
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| Q |
500 |
ttg |
502 |
Q |
| |
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||| |
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| T |
30272739 |
ttg |
30272741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 25965072 - 25965218
Alignment:
| Q |
229 |
tcataccattttattctcaggatcaatattcattgcaacattgataaactccttgtccaaaaatggaactctggcttctaaaccccaagcaaaggttgat |
328 |
Q |
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|||||||||||| | |||||||||||| | ||||||||| |||||||| ||||||||||||||||| || || ||||||| ||||| ||| | |||||| |
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| T |
25965072 |
tcataccattttgtactcaggatcaatgtccattgcaactttgataaaatccttgtccaaaaatggtaccctagcttctagtccccatgcatatgttgat |
25965171 |
T |
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| Q |
329 |
ttatttgctctctggcaatcatattggtggagtgctttgatctgcat |
375 |
Q |
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| T |
25965172 |
ttatttgctctcaaacaatcatacctatgaagtgctttgatctgcat |
25965218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25964908 - 25964977
Alignment:
| Q |
1 |
cctttggcagataagggttctcttcatcatcaaaggccttcctcagaatatacttctcaattcgtccttc |
70 |
Q |
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|||| ||||||||||| ||||||||||||||||| |||||||| ||||| | |||||||||| |||||| |
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| T |
25964908 |
ccttaggcagataaggattctcttcatcatcaaaagccttccttagaatccatttctcaattcttccttc |
25964977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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