View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_6 (Length: 445)
Name: NF17705_low_6
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 128 - 433
Target Start/End: Original strand, 11982530 - 11982835
Alignment:
| Q |
128 |
aaaatcgacacattttgttcttaaaccacataacatagtactaatcaaaaggcagagacttcggtccgattatagaatcggccagatggacttccattgg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
11982530 |
aaaatcgacacattttgttcttaaaccacataacatagtactaatcaaaaggcagagacttcagtccggttatagaatcggccagatggacttccattgg |
11982629 |
T |
|
| Q |
228 |
gaagcaatgctagcttcacaacactagtagcaccttcctcagcagttaagagaccagtattagcagtaatatctgtgatgacataacccgggcaaacact |
327 |
Q |
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|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| |
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| T |
11982630 |
gaagcaatgctagcttgacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatact |
11982729 |
T |
|
| Q |
328 |
attgatggttaaagtaggtaatttcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccagcct |
427 |
Q |
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||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11982730 |
attgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccatcct |
11982829 |
T |
|
| Q |
428 |
ttgctt |
433 |
Q |
| |
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|||||| |
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|
| T |
11982830 |
ttgctt |
11982835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 135 - 433
Target Start/End: Original strand, 11977900 - 11978201
Alignment:
| Q |
135 |
acacattttgttcttaaaccacataacatagtactaatcaaaaggcaga---gacttcggtccgattatagaatcggccagatggacttccattgggaag |
231 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||| || ||||||| ||||||||||||||||||||||||| |
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| T |
11977900 |
acacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagtcctatgatagaattggccagatggacttccattgggaag |
11977999 |
T |
|
| Q |
232 |
caatgctagcttcacaacactagtagcaccttcctcagcagttaagagaccagtattagcagtaatatctgtgatgacataacccgggcaaacactattg |
331 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||| |
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| T |
11978000 |
caatgctagcttcacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
11978099 |
T |
|
| Q |
332 |
atggttaaagtaggtaatttcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccagcctttgc |
431 |
Q |
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||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11978100 |
atgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccatcctttgc |
11978199 |
T |
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| Q |
432 |
tt |
433 |
Q |
| |
|
|| |
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| T |
11978200 |
tt |
11978201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 164 - 426
Target Start/End: Original strand, 11972123 - 11972385
Alignment:
| Q |
164 |
agtactaatcaaaaggcagagacttcggtccgattatagaatcggccagatggacttccattgggaagcaatgctagcttcacaacactagtagcacctt |
263 |
Q |
| |
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|||||||||||||||| ||| ||||| ||||| | | |||| |||||| | || ||||| |||| | ||||||||||||||||||| |||||||| |
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| T |
11972123 |
agtactaatcaaaaggaagacacttcagtccggtaaaagaacatgccagaagtaccaccatttggaattagtgctagcttcacaacactaacagcacctt |
11972222 |
T |
|
| Q |
264 |
cctcagcagttaagagaccagtattagcagtaatatctgtgatgacataacccgggcaaacactattgatggttaaagtaggtaatttcttagcaagaat |
363 |
Q |
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| ||| | ||||| | ||| |||| ||||| |||||||| ||| |||||| |||||||||||||||||| || |||||| ||||| ||||||||||| |
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| T |
11972223 |
cttcaaccgttaacaaaccgttattggcagttatatctgttatggtataaccagggcaaacactattgatgcatatagtaggaaattttttagcaagaat |
11972322 |
T |
|
| Q |
364 |
tcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccagcc |
426 |
Q |
| |
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||||||||| |||||||||||||||||||| | || |||||| || ||| ||||||||||| |
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| T |
11972323 |
tcttgtatatgcattcatagcagctttagagatgatataagctcccaaagtcttaggccagcc |
11972385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 392
Target Start/End: Original strand, 11996130 - 11996324
Alignment:
| Q |
198 |
tatagaatcggccagatggacttccattgggaagcaatgctagcttcacaacactagtagcaccttcctcagcagttaagagaccagtattagcagtaat |
297 |
Q |
| |
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||||||| ||||||||||||| || |||||||| | ||||| | | ||| | | ||||| ||||| ||| | || || | ||||||||||| ||| || |
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| T |
11996130 |
tatagaaaaggccagatggactacctttgggaagtagtgctaacctaacaggatttgtagctccttcttcaactgtcaatataccagtattagtagtcat |
11996229 |
T |
|
| Q |
298 |
atctgtgatgacataacccgggcaaacactattgatggttaaagtaggtaatttcttagcaagaattcttgtataagcattcatagcagctttag |
392 |
Q |
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||| || | |||||||| |||||||||| ||||||| ||| | || ||||||| ||||||||| ||||||| |||||||||| |||||||| |
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| T |
11996230 |
atcagtcttaacataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaagaattattgtataggcattcatagaagctttag |
11996324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 12007944 - 12008060
Alignment:
| Q |
275 |
aagagaccagtattagcagtaatatctgtgatgacataacccgggcaaacactattgatggttaaagtaggtaatttcttagcaagaattcttgtataag |
374 |
Q |
| |
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|||||||| ||||||||||| ||||| || |||||||||| |||||||||| ||||||| ||| ||| | || || |||| |||||||||||| | |
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| T |
12007944 |
aagagaccggtattagcagttatatcggttttgacataaccagggcaaacacaattgatgcagaaaccagggtacttttttgcaataattcttgtatagg |
12008043 |
T |
|
| Q |
375 |
cattcatagcagcttta |
391 |
Q |
| |
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||||||||| ||||||| |
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| T |
12008044 |
cattcatagaagcttta |
12008060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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