View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17705_low_8 (Length: 407)
Name: NF17705_low_8
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 189 - 394
Target Start/End: Original strand, 46289161 - 46289367
Alignment:
| Q |
189 |
atcggtcgtaggatgatgtttt-tgtgagtatcttatttttagttgaaatatgaaaactatattggtcgggctttaccaaggcccgtgggctttttgtca |
287 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289161 |
atcggtcgtagcatgatgttttttgtgagtatcttatttttagttgaaatatgaaaactatattggtcgggctttaccaaggcccgtgggctttttgtca |
46289260 |
T |
|
| Q |
288 |
agaaaagcacttaaaagcccgcgaatatttcccgccaccgattcaccacccacctacaaagacactttcgtttcatttcccaatcacttcacataaacct |
387 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46289261 |
agaaaagcactgaaaagcccgcgaatatttcccgccaccgattcaccacccacctacaaagacactttcgtttcatttcccaatcacttcacataaacct |
46289360 |
T |
|
| Q |
388 |
tcttctt |
394 |
Q |
| |
|
||||||| |
|
|
| T |
46289361 |
tcttctt |
46289367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 46289038 - 46289153
Alignment:
| Q |
14 |
taatactctttctaacaaggaatataaaaccgattcgatggttggagtgataaagttaatgactgaagtgataaaaagattgacgattatatcctaccta |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46289038 |
taatactctttctaataaggaatataaaaccgattcgatggtt--------aaagttaatgactgaagtgataaaaagattgacgattctatcctaccta |
46289129 |
T |
|
| Q |
114 |
caacataacactaacatgttaaca |
137 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
46289130 |
caacgtaacactaacatgttaaca |
46289153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University