View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_low_9 (Length: 380)

Name: NF17705_low_9
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_low_9
NF17705_low_9
[»] chr1 (6 HSPs)
chr1 (152-324)||(39759334-39759506)
chr1 (3-159)||(39759523-39759679)
chr1 (297-380)||(14389424-14389507)
chr1 (297-380)||(45319477-45319560)
chr1 (297-380)||(52706390-52706473)
chr1 (299-380)||(45535759-45535840)
[»] chr7 (9 HSPs)
chr7 (297-380)||(30111795-30111878)
chr7 (297-380)||(33475539-33475622)
chr7 (297-380)||(152863-152946)
chr7 (287-380)||(47912515-47912608)
chr7 (297-380)||(12252387-12252470)
chr7 (314-380)||(35089115-35089181)
chr7 (299-380)||(27417651-27417732)
chr7 (297-380)||(43056689-43056772)
chr7 (348-380)||(46035502-46035534)
[»] chr3 (14 HSPs)
chr3 (297-380)||(36054011-36054094)
chr3 (297-380)||(30589847-30589930)
chr3 (297-380)||(38628821-38628904)
chr3 (297-378)||(26292565-26292646)
chr3 (314-380)||(46223324-46223390)
chr3 (297-380)||(2124706-2124789)
chr3 (297-380)||(23360579-23360662)
chr3 (297-380)||(23367419-23367502)
chr3 (297-380)||(24149838-24149921)
chr3 (347-380)||(23697973-23698006)
chr3 (347-380)||(23716428-23716461)
chr3 (347-380)||(23734884-23734917)
chr3 (347-380)||(23754547-23754580)
chr3 (347-380)||(50899497-50899530)
[»] scaffold0237 (1 HSPs)
scaffold0237 (297-380)||(20448-20531)
[»] scaffold0153 (1 HSPs)
scaffold0153 (297-380)||(33826-33909)
[»] scaffold0016 (1 HSPs)
scaffold0016 (297-380)||(80794-80877)
[»] chr8 (10 HSPs)
chr8 (297-380)||(4656078-4656161)
chr8 (297-380)||(7149036-7149119)
chr8 (297-380)||(9458509-9458592)
chr8 (297-380)||(40264276-40264359)
chr8 (297-378)||(41385871-41385952)
chr8 (300-380)||(10795379-10795459)
chr8 (314-380)||(42275946-42276012)
chr8 (314-380)||(43604393-43604459)
chr8 (316-380)||(39371185-39371249)
chr8 (347-380)||(43489922-43489955)
[»] chr6 (3 HSPs)
chr6 (297-380)||(3109351-3109434)
chr6 (297-380)||(29864753-29864836)
chr6 (297-380)||(6475744-6475827)
[»] chr5 (7 HSPs)
chr5 (297-380)||(11632687-11632770)
chr5 (300-380)||(10553738-10553818)
chr5 (300-380)||(13949805-13949885)
chr5 (301-380)||(3603465-3603544)
chr5 (297-380)||(10553440-10553523)
chr5 (297-380)||(40411419-40411503)
chr5 (314-376)||(18676949-18677011)
[»] chr4 (7 HSPs)
chr4 (297-380)||(42315884-42315967)
chr4 (297-380)||(7809000-7809083)
chr4 (297-380)||(7820951-7821034)
chr4 (297-380)||(42217449-42217531)
chr4 (314-380)||(3434845-3434911)
chr4 (314-380)||(8583019-8583085)
chr4 (347-380)||(56399042-56399075)
[»] chr2 (4 HSPs)
chr2 (297-380)||(29941891-29941974)
chr2 (297-380)||(45547917-45548000)
chr2 (297-380)||(7486958-7487041)
chr2 (297-380)||(6288557-6288640)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 152 - 324
Target Start/End: Complemental strand, 39759506 - 39759334
Alignment:
Q  152 tgaattcagtggcaaattaacagcgtaaatggcaatcgtatgcatacgtgaatcgaaacacatatttcaacactcataagatgccatacgtgaatggata 251  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39759506 tgaattcaatggcaaattaacagcgtaaatggcaatcgtatgcatacgtgaatcgaaacccatatttcaacactcataagatgccatacgtgaatggata 39759407  T
Q  252 aaatttgattagacaaataatttcatgtaaaattcactttcaggcgggtgtatttgattggtattttaaaaaa 324  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39759406 aaatttgatttgacaaataatttcatgtaaaattcacttttaggcgggtgtatttgattggtattttaaaaaa 39759334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 39759679 - 39759523
Alignment:
Q  3 atcacttataacaccaggagagaaaaaattcgtgtttatnnnnnnnnttaaattcgatccaattttagtgcaatttacattagatcaatttgatcatgtt 102  Q
    |||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39759679 atcacttacaacaccaggagagaaaaaattcgtgtttataaaaaaaattaaattcgatccaattttagtgcaatttacattagatcaatttgatcatgtt 39759580  T
Q  103 tttccctggtaagaagaaacatgaattgcttcgtgataccaattcgtgttgaattca 159  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39759579 tttcccttgtaagaagaaacatgaattgcttcgtgataccaattcgtattgaattca 39759523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 14389507 - 14389424
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  14389507 gggtgtattggattgagattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattga 14389424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 45319560 - 45319477
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  45319560 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 45319477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 52706473 - 52706390
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| | | ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  52706473 gggtgtattggattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 52706390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 45535840 - 45535759
Alignment:
Q  299 gtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||| |||||  ||||||||| ||| ||||||||||||       |||||||||| |||| ||||||| ||||||||||    
T  45535840 gtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttagaagattttgttggattgtattga 45535759  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 30111878 - 30111795
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||||||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  30111878 gggtgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 30111795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 33475622 - 33475539
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||||||||||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  33475622 gggtgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 33475539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 152946 - 152863
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  152946 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 152863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 380
Target Start/End: Original strand, 47912515 - 47912608
Alignment:
Q  287 actttcaggcgggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||| ||| |||| |||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  47912515 actttaaggggggtatattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 47912608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 12252387 - 12252470
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| | | ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  12252387 gggtgtattggattgagattttaaaagattgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 12252470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 35089115 - 35089181
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  35089115 attttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 35089181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Original strand, 27417651 - 27417732
Alignment:
Q  299 gtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||| |||||  ||||||||| | ||||||||||||||       ||||||||||||||||||||||  ||||||||||    
T  27417651 gtgtattggattgagattttaaaagagtattttgatagaaaaaatcttgaagattttaaaagactttgttagattgtattga 27417732  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 43056689 - 43056772
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||||||  ||||  ||||||||| | | ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  43056689 gggtgtattgaattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 43056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 46035502 - 46035534
Alignment:
Q  348 aagattttaaaagactttgttgaattgtattga 380  Q
    |||||||||||||||||||| ||||||||||||    
T  46035502 aagattttaaaagactttgtggaattgtattga 46035534  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 36054011 - 36054094
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||||||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  36054011 gggtgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 36054094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 30589930 - 30589847
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  30589930 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 30589847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 38628821 - 38628904
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||| ||||||||||||||||||||||||||||||    
T  38628821 gggtgtattggattgagattttaaaagactcttttgatagaaaaaatcttgaaaattttaaaagactttgttgaattgtattga 38628904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 26292565 - 26292646
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtatt 378  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||    
T  26292565 gggtgtattggattgagattttaaaagactgttttgatagaaaatatcttgaagattttaaaagactttgttggattgtatt 26292646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 46223324 - 46223390
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  46223324 attttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 46223390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 2124706 - 2124789
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| |||||||| |||       ||| ||||||||||||||||||| ||||||||||    
T  2124706 gggtgtattggattgagattttaaaagactgttttgataaaaaaaatcttgaaaattttaaaagactttgttggattgtattga 2124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 23360662 - 23360579
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||| ||||| ||| |||||||| |||       ||||||||||||||||||||||| ||||||||||    
T  23360662 gggtgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgtattga 23360579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 23367502 - 23367419
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||| ||||| ||| |||||||| |||       ||||||||||||||||||||||| ||||||||||    
T  23367502 gggtgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgtattga 23367419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 24149838 - 24149921
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| ||||   ||||||||| ||||||||||||||||       |||||||||||| |||||||||| ||| ||||||    
T  24149838 gggtgtattggattaagattttaaaagactattttgatagaaaaaatcttgaagattttaaatgactttgttggattatattga 24149921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 23698006 - 23697973
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||| ||||||||||    
T  23698006 gaagattttaaaagactttgttggattgtattga 23697973  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 23716461 - 23716428
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||| ||||||||||    
T  23716461 gaagattttaaaagactttgttggattgtattga 23716428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 23734917 - 23734884
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||| ||||||||||    
T  23734917 gaagattttaaaagactttgttggattgtattga 23734884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 23754580 - 23754547
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||| ||||||||||    
T  23754580 gaagattttaaaagactttgttggattgtattga 23754547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 50899497 - 50899530
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||| ||||||||||    
T  50899497 gaagattttaaaagactttgttggattgtattga 50899530  T

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Target: scaffold0237 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 20448 - 20531
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  20448 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 20531  T

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Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 33826 - 33909
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  33826 gggtgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 33909  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 80794 - 80877
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  80794 gggtgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 80877  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 4656161 - 4656078
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  4656161 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 4656078  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 7149119 - 7149036
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  7149119 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 7149036  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 9458592 - 9458509
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  9458592 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 9458509  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 40264276 - 40264359
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  40264276 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 40264359  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 41385871 - 41385952
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtatt 378  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||    
T  41385871 gggtgtattggattgagattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtatt 41385952  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 10795379 - 10795459
Alignment:
Q  300 tgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  10795379 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 10795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 42276012 - 42275946
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  42276012 attttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 42275946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 43604393 - 43604459
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  43604393 attttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 43604459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 39371185 - 39371249
Alignment:
Q  316 tttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  39371185 tttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattga 39371249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 43489955 - 43489922
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||| ||||||||||    
T  43489955 gaagattttaaaagactttgttggattgtattga 43489922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 3109351 - 3109434
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  3109351 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 3109434  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 29864753 - 29864836
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  29864753 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 29864836  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 6475744 - 6475827
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||||||  ||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  6475744 gggtgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 6475827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 11632687 - 11632770
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  11632687 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 11632770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 10553818 - 10553738
Alignment:
Q  300 tgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  10553818 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 10553738  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 13949805 - 13949885
Alignment:
Q  300 tgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  13949805 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 13949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 3603465 - 3603544
Alignment:
Q  301 gtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  3603465 gtattagattgaaattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattga 3603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 10553440 - 10553523
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  |||| |||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  10553440 gggtgtattggattgagatttaaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 10553523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 40411503 - 40411419
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnn-gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||        ||||||||||||||||||||||| ||||||||||    
T  40411503 gggtgtattggattgagattttaaaagactgttttgatagaaaaaaatcttgaagattttaaaagactttgttggattgtattga 40411419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 18676949 - 18677011
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgta 376  Q
    ||||||||| ||||||||||||||||       ||||||||||||||| ||||||| ||||||    
T  18676949 attttaaaagactattttgatagaaaaaatcttgaagattttaaaagattttgttgtattgta 18677011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 42315967 - 42315884
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  42315967 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 42315884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 7809083 - 7809000
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| |||  |||||||||||       ||||||||||||||||||||||| ||||||||||    
T  7809083 gggtgtattggattgagattttaaaagactggtttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 7809000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 7821034 - 7820951
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| |||  |||||||||||       ||||||||||||||||||||||| ||||||||||    
T  7821034 gggtgtattggattgagattttaaaagactgatttgatagaaaaattcttgaagattttaaaagactttgttggattgtattga 7820951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 42217449 - 42217531
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    |||||||||||||||  ||||||||| ||| ||||||||||||       ||||||||| ||||||||||||| ||||||||||    
T  42217449 gggtgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagatttt-aaagactttgttggattgtattga 42217531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 3434845 - 3434911
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||||| |||||||       ||||||||||||||||||||||| ||||||||||    
T  3434845 attttaaaagactattttaatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 3434911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 8583019 - 8583085
Alignment:
Q  314 attttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  8583019 attttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 8583085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 56399075 - 56399042
Alignment:
Q  347 gaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||||||||||||||||||||| ||||||    
T  56399075 gaagattttaaaagactttgttgaattttattga 56399042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 29941974 - 29941891
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  29941974 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 29941891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 45548000 - 45547917
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||| ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  45548000 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 45547917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 7486958 - 7487041
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||||||| |||||  ||||||||| ||  ||||||||||||       ||||||||||||||||||||||| ||||||||||    
T  7486958 gggtgtattggattgagattttaaaagaccgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 7487041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 380
Target Start/End: Original strand, 6288557 - 6288640
Alignment:
Q  297 gggtgtatttgattggtattttaaaaaactattttgatagaaannnnnnngaagattttaaaagactttgttgaattgtattga 380  Q
    ||||| ||| |||||  ||||||||| ||| ||||||||||||        |||||||||||||||||||||| ||||||||||    
T  6288557 gggtggattggattgagattttaaaagactgttttgatagaaatttttttaaagattttaaaagactttgttggattgtattga 6288640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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