View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17706_low_2 (Length: 404)
Name: NF17706_low_2
Description: NF17706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17706_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 15798793 - 15798429
Alignment:
| Q |
17 |
atcttcttgtatcacaacattgctaaagtccataccaggtgggataacctgtgaggagtgtgcttcattgagtcattgaacaaaagtggaatatttacgc |
116 |
Q |
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| T |
15798793 |
atcttcttgtatcacaacattgctaaagtccataccaggtgggataacctgtgaggagtgtacttcattgagtcattcaacaaaagtggaatatttgcg- |
15798695 |
T |
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| Q |
117 |
gatgaaatgaaaatacaaaaacaga--gaaaacaacatactcattcactagcacgtaaacaggcacatctgtgatgcttttcgcaataaaaataatggta |
214 |
Q |
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| T |
15798694 |
----aaatgaagatacaaaaacagaaagaaaacaacatactcattcactagcacgcaaacaggaacatctgtgatgcttttcgcaataaaaataatggaa |
15798599 |
T |
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| Q |
215 |
gttacaaatttttatgcgattatttgaagaaatttagttatttgattgtataaaaacgatacagttgtaaataaaatcgtttaaatgaagggtgaaactg |
314 |
Q |
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| T |
15798598 |
gttacaaaattttatgagattatttgaagaaatttagttatttgattgtataaaaacgatacagttgtaaataaaatcgtttaaatgaagggtgaaaatg |
15798499 |
T |
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| Q |
315 |
gaagagcgnnnnnnnggcacaccaaaactttgaagtaatattataatttcaattcgaacatttaatctcat |
385 |
Q |
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| T |
15798498 |
gaagagcg-aaaaaaggcacacgaaaactttgaaggaatattataacttcaatttgaacattcaatctcat |
15798429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 39811314 - 39811263
Alignment:
| Q |
16 |
catcttcttgtatcacaacattgctaaagtccataccaggtgggataacctg |
67 |
Q |
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| T |
39811314 |
catcttcttgtatcaccacattgctaaagtccataccaggagggataacctg |
39811263 |
T |
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