View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17706_low_3 (Length: 380)

Name: NF17706_low_3
Description: NF17706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17706_low_3
NF17706_low_3
[»] chr1 (2 HSPs)
chr1 (16-349)||(46014330-46014663)
chr1 (175-288)||(39742507-39742621)
[»] chr7 (3 HSPs)
chr7 (176-272)||(23940521-23940617)
chr7 (176-214)||(2016949-2016987)
chr7 (174-232)||(26979690-26979748)
[»] chr5 (1 HSPs)
chr5 (186-274)||(33155605-33155693)
[»] chr8 (4 HSPs)
chr8 (184-274)||(39785586-39785676)
chr8 (186-274)||(34018241-34018329)
chr8 (175-291)||(5654683-5654800)
chr8 (186-274)||(6863034-6863122)
[»] chr4 (1 HSPs)
chr4 (175-218)||(42683969-42684012)
[»] chr3 (2 HSPs)
chr3 (280-327)||(33267435-33267482)
chr3 (181-288)||(2585907-2586015)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 46014330 - 46014663
Alignment:
Q  16 aatattgtaacttataaatgtgtaagagacatgttaatattgaactaccttgaatgggaatgtgacccgtataatgcaacttataaatcattcaatctta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46014330 aatattgtaacttataaatgtgtaagagacatgttaatattgaactaccttgaatgagaatgtgacccgtataatgcaacttataaatcattcaatctta 46014429  T
Q  116 aataacttcagcactgggcacgtgggtcacatttttaaattatgagtgtattcttatatcaattatatgatgcacaagtgagatatgtcttgtatcatgt 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46014430 aataacttcagcactgggcatgtgggtcacatttttaaattatgagtgtattcttatatcaattatatgatgcacaagtgagatatgtcttgtatcatgt 46014529  T
Q  216 acaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatgaatgatttattgatccaagtgtaaaaaagacatttgtacata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46014530 acaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatgaatgatttattgatccaagtgtaaaaaagacatttgtacata 46014629  T
Q  316 gtgtaaaactattttatttatgtatactagacaa 349  Q
    ||||||||||||||||||||||| ||||||||||    
T  46014630 gtgtaaaactattttatttatgtgtactagacaa 46014663  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 288
Target Start/End: Original strand, 39742507 - 39742621
Alignment:
Q  175 caattatatgatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 274  Q
    ||||| |||||||| ||||||||| |   | || ||||||||||| |||||||| | | |||||||||| ||||| || |||||||| ||||| ||||||    
T  39742507 caattctatgatgcccaagtgagacaaaccctgcatcatgtacaaactagtttttacccttagatcaataaatcccaccattaaattaaatgaaatatga 39742606  T
Q  275 -atgatttattgatc 288  Q
     |||| |||||||||    
T  39742607 catgacttattgatc 39742621  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 272
Target Start/End: Original strand, 23940521 - 23940617
Alignment:
Q  176 aattatatgatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatat 272  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||||| ||||  || |||||||| ||||| ||||    
T  23940521 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagctacttttcatcgttagatcaataaatctcaccattaaattaaatgaaatat 23940617  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 2016987 - 2016949
Alignment:
Q  176 aattatatgatgcacaagtgagatatgtcttgtatcatg 214  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  2016987 aattatatggtgcacaagtgagataagtcttgtatcatg 2016949  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 26979748 - 26979690
Alignment:
Q  174 tcaattatatgatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatc 232  Q
    |||||| |||| |||||||||||||||  |||||||||||| ||||| | |||||||||    
T  26979748 tcaattttatggtgcacaagtgagataaatcttgtatcatgcacaagtttgttttcatc 26979690  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 33155693 - 33155605
Alignment:
Q  186 tgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 274  Q
    ||||||||||||| | |||||| |||||| ||||||||||||||| |||| ||||||| ||||| || |||||||| ||||||| ||||    
T  33155693 tgcacaagtgagacaagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccattaaattaaatgagaaatga 33155605  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 39785586 - 39785676
Alignment:
Q  184 gatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 274  Q
    ||||||||||||||| | |||||| |||||| | ||||||||||||| |||| ||||||| ||||| || |||||||| ||||||| ||||    
T  39785586 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatga 39785676  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 34018329 - 34018241
Alignment:
Q  186 tgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 274  Q
    |||| |||||||| | |||||| |||||| ||||||||||||| | |||| ||||||| ||| | || |||||||| ||||||| ||||    
T  34018329 tgcataagtgagacaagtcttgcatcatgcacaagctagtttttaccattggatcaataaattccaccattaaattaaatgagaaatga 34018241  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 291
Target Start/End: Complemental strand, 5654800 - 5654683
Alignment:
Q  175 caattatatgatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 274  Q
    |||||||||| || |||| ||||| | ||||||||||||  | || | | |||||| || | ||| ||| ||| | ||||||||||| ||||||||||||    
T  5654800 caattatatgttgtacaaatgagacaagtcttgtatcatacagaaacaaattttcaccacttgataaataaattccactattaaattaaatgagatatga 5654701  T
Q  275 -atgatttattgatccaa 291  Q
     |||| ||||||||||||    
T  5654700 tatgacttattgatccaa 5654683  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 6863034 - 6863122
Alignment:
Q  186 tgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga 274  Q
    |||| |||||||| | |||||| |||||  |||||||||||| || |||| ||||||| ||||  || |||||||| ||||| ||||||    
T  6863034 tgcataagtgagacaagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaatgaaatatga 6863122  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 42683969 - 42684012
Alignment:
Q  175 caattatatgatgcacaagtgagatatgtcttgtatcatgtaca 218  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||    
T  42683969 caattttatgatgcacaagtcagataagtcttgtatcatgtaca 42684012  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 33267482 - 33267435
Alignment:
Q  280 ttattgatccaagtgtaaaaaagacatttgtacatagtgtaaaactat 327  Q
    |||||||||||| |||||||||||||||||||||| ||| || |||||    
T  33267482 ttattgatccaattgtaaaaaagacatttgtacatggtgcaagactat 33267435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 2586015 - 2585907
Alignment:
Q  181 tatgatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatatga-atgat 279  Q
    |||||||||||| ||||||| |||||| ||||| || || |||||||| | |||||||| ||| |||   | | ||||||| |||||||||| | ||||     
T  2586015 tatgatgcacaaatgagataagtcttgcatcatctataaactagttttaaccattagataaataaatttcattgttaaattaaatgagatataatatgac 2585916  T
Q  280 ttattgatc 288  Q
    |||||||||    
T  2585915 ttattgatc 2585907  T

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