View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17706_low_6 (Length: 326)
Name: NF17706_low_6
Description: NF17706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17706_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 87 - 257
Target Start/End: Complemental strand, 18331763 - 18331611
Alignment:
| Q |
87 |
gattctaagtaaggttattatttgaagaacaatttatgttatccaatgaacctgaaaccagaagtttaaattcaaagatacttagcaagtcatataactt |
186 |
Q |
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| T |
18331763 |
gattctatgtaaggttattatttgaagaacaattg-tgttatccaatgaagctcaaaccagaagtttaaattcaaagatacttagcaa------------ |
18331677 |
T |
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| Q |
187 |
tacatgtcaaatttgcatagtatttacaaaatcgtacaagtcagccgattcgagcaagttttgagtacaaa |
257 |
Q |
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| T |
18331676 |
-----gtcaaatttgcatagtatttacaaaatcgtacaagtcagccgattcgagcaagttttgagtacaaa |
18331611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 18331862 - 18331793
Alignment:
| Q |
19 |
caaagaccaagaaagttactgttaaatcactgtatgaggaatgaagaaattatcgtcttgtgatcaagga |
88 |
Q |
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| T |
18331862 |
caaagaccaagaaagttactgttaaatcactgtatgaggaatgaagaaattatcgtcttgtgatcaagga |
18331793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 18329617 - 18329517
Alignment:
| Q |
227 |
tcagccgattcgagcaagttttgagtacaaacttcatgcaagtaaat-ga-----tgtttttcatttcaaaatcgttggagtcaggcaactataaccttt |
320 |
Q |
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| T |
18329617 |
tcagccgattcgagcaagttttgagtacaaacttcatgcaagtagctagaagatttttttttcatttcaaaatcgttggagtcaggccactgtaactttt |
18329518 |
T |
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| Q |
321 |
g |
321 |
Q |
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| T |
18329517 |
g |
18329517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 35186766 - 35186709
Alignment:
| Q |
234 |
attcgagcaagttttgagtacaaacttcatgcaagtaaatgatgtttttcatttcaaa |
291 |
Q |
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| T |
35186766 |
attctagcaaattttgagtacaaagttcacacaagtagatgatgtttttcatttcaaa |
35186709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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