View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17706_low_7 (Length: 277)
Name: NF17706_low_7
Description: NF17706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17706_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 8842654 - 8842398
Alignment:
| Q |
1 |
tcaattcagtcaattcactcccacatggtcacaagatacaaactcaatagatatgtatcaattaattattaatcattatgatattgtcattttcttccag |
100 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8842654 |
tcaattcattcaattccctcccacatggtcacaagatacaaactcaatagatatgtatcaattaattattaatcattatgatattgtcattttcttccag |
8842555 |
T |
|
| Q |
101 |
ctactactagtgaagatgtggagtacaaatatctacctagttgtccagatgatgggcctgaaaaggaaattaaacaagtatgtccatattttaatattgt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8842554 |
ctactacaagtgaagatgtggagtacaagtatctacctagttgtccagatgatgggcctgaaaaggaaattaaacaagtatgtccatattttaatattgt |
8842455 |
T |
|
| Q |
201 |
tttttctttatatagattaatcatttctaatgcttaaatcatatttggaagtacacc |
257 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8842454 |
tgtttctttatatagattaatcatttctaatgcttaaatcatatttggaagtacacc |
8842398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University