View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17706_low_8 (Length: 238)

Name: NF17706_low_8
Description: NF17706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17706_low_8
NF17706_low_8
[»] scaffold0066 (1 HSPs)
scaffold0066 (11-238)||(1942-2175)
[»] chr8 (1 HSPs)
chr8 (4-238)||(23746049-23746289)
[»] chr5 (1 HSPs)
chr5 (4-158)||(21081583-21081737)
[»] scaffold0163 (1 HSPs)
scaffold0163 (4-238)||(19803-20034)
[»] chr3 (2 HSPs)
chr3 (16-238)||(40089513-40089732)
chr3 (16-238)||(2159165-2159384)
[»] chr1 (1 HSPs)
chr1 (4-238)||(20175248-20175479)


Alignment Details
Target: scaffold0066 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 2175 - 1942
Alignment:
Q  11 catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagctggaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  | ||||||||||||||    
T  2175 catcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcctccaagctggaaat 2076  T
Q  109 cagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccacgaca----aaaaatggctatgatttt 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||  || ||||    ||| |||||| ||||||     
T  2075 cagttgttgatcatcctaaagagttaatcattggtgacactgctgataaagtaagaacaagatcatcataacaagacaaatcaaatatggctttgatttc 1976  T
Q  205 ccaaatggagccaaaatccttaaatgaagctatc 238  Q
     ||||| |||||||||||| ||||||||| ||||    
T  1975 tcaaatagagccaaaatccataaatgaagttatc 1942  T

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Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 23746289 - 23746049
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatcca--cgtccaagc 101  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||    
T  23746289 agatgaacatcattattctagtcatcaacaaacttctgatatatcaaaacaaaaggatgaagacgaaccaaattcatcttctctatccattcgtccaagc 23746190  T
Q  102 tggaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccacgaca----aaaaatggcta 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  ||  |||    ||| |||| ||    
T  23746189 tggaaatcagttgttgatcatcctaaagagttaatcatttgtgactctgctgataaagtaagaacaagatcatcataacaacacaaatcaaacatggtta 23746090  T
Q  198 tgattttccaaatggagccaaaatccttaaatgaagctatc 238  Q
    ||||||  ||||| |||||||||||| ||||||||| ||||    
T  23746089 tgatttctcaaatagagccaaaatccataaatgaagttatc 23746049  T

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Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 21081737 - 21081583
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21081737 agatgaacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaatgttgaagacgaaccagattcatcttctctatccacgtccaagctg 21081638  T
Q  104 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa 158  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21081637 gaaattagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaa 21081583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 19803 - 20034
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 103  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||    ||  |||   |||||||||    
T  19803 agatgaacctcatcattctagtcatcaacaaacctctgatatatcaaaacaaaaggatgaagatgaaccagattcat----tcattcc---tccaagctg 19895  T
Q  104 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccacgaca----aaaaatggctatg 199  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||    ||| |||||||||    
T  19896 gaaatcagttgttgatcatccaaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg 19995  T
Q  200 attttccaaatggagccaaaatccttaaatgaagctatc 238  Q
    ||||  |||||||||||||||||| ||||||||||||||    
T  19996 atttctcaaatggagccaaaatccataaatgaagctatc 20034  T

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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 40089732 - 40089513
Alignment:
Q  16 tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt 115  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||| |||||| ||||||    ||  |||   ||||| |||||||||||||||    
T  40089732 tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaaattcat----tcattcc---tccaaactggaaatcagttgt 40089640  T
Q  116 tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccacgaca----aaaaatggctatgattttccaaatg 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||    ||| |||||||||||||  ||||||    
T  40089639 tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatttctcaaatg 40089540  T
Q  212 gagccaaaatccttaaatgaagctatc 238  Q
    |||||||||||| ||||||||||||||    
T  40089539 gagccaaaatccataaatgaagctatc 40089513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 2159165 - 2159384
Alignment:
Q  16 tcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctggaaatcagttgt 115  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||| ||||||  |||||    ||  |||   |||||||||||||||||||||    
T  2159165 tcattctagacatcaacaaacctctgatgtatcaaaacagaagaatgaagatgaaccaagttcat----tcattcc---tccaagctggaaatcagttgt 2159257  T
Q  116 tgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccacgaca----aaaaatggctatgattttccaaatg 211  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||    ||| ||||||||||| |  ||||||    
T  2159258 tgatcatcctaaagaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatgatctctcaaatg 2159357  T
Q  212 gagccaaaatccttaaatgaagctatc 238  Q
    |||||||||||| ||||||||||||||    
T  2159358 gagccaaaatccataaatgaagctatc 2159384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 20175248 - 20175479
Alignment:
Q  4 agatggacatcatcattctagtcatcaacaaacttctgatatatcaaaacaaaaggttgaagacgaaccagattcatcttctctatccacgtccaagctg 103  Q
    ||||| || |||||||||||| ||||||||||| ||||||||||||||||||||   |||||| ||| || ||||||     |  |||   |||||||||    
T  20175248 agatgaacctcatcattctagacatcaacaaacatctgatatatcaaaacaaaaaaatgaagatgaaacaaattcata----cattcc---tccaagctg 20175340  T
Q  104 gaaatcagttgttgatcatcctaaagagttaatcatttgtgacactgctgacaaagtaagaacaagatcatcattccacgaca----aaaaatggctatg 199  Q
    ||||||||||||||||||||| ||| | ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||    ||| |||||||||    
T  20175341 gaaatcagttgttgatcatccaaaaaaattaatcattggtgacactgctgataaagtaagaacaagatcatcattccaagacaaaacaaacatggctatg 20175440  T
Q  200 attttccaaatggagccaaaatccttaaatgaagctatc 238  Q
    || |  |||||||||||||||||| ||||||||||||||    
T  20175441 atatctcaaatggagccaaaatccataaatgaagctatc 20175479  T

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