View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17707_high_2 (Length: 464)

Name: NF17707_high_2

Description: NF17707

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17707_high_2

[»] chr6 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 83; E-Value: 4e-39

Query Start/End: Original strand, 114 - 304

Target Start/End: Complemental strand, 31654256 - 31654066

Alignment:

Q	114	taggtgactaccaatttcggtcttcgccctgctttcttccgttcgatttggtttcgctttgccagaaaaacttcacctttacacatagagttaatcgacg	213	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	31654256	taggtgaataccaatttcggtttttgctatgctttctaccgttcgatttggtttcgccttggcagaaaatctgcatttttacacataaagttaatcgaca	31654157	T

Q	214	caccgcaaagattcacagttgctagagttttcgaacaagttctcacgaaaatctaagaaagtatatcagttggaattttcgagccaccatt	304	Q
		\|\|\| \|\| \|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|
T	31654156	aaccacatagttccatagttgctagagttttcgaacaagttctcgcgaaaatctcagaaagtatctcagttgaaaattccgagccgccatt	31654066	T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 55; E-Value: 2e-22

Query Start/End: Original strand, 351 - 444

Target Start/End: Original strand, 7034234 - 7034327

Alignment:

Q	351	ttatacagagcatatttaagtgactatgaaatagctactaataaaagttccttcacataagga-attgtacaatacattgaagtcggatcctgcc	444	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	7034234	ttatacagagcatatttaagtgactatgaaataactac-aataaaagttccttcacataaagagaatgtgcaatacattgaagctggatcctgcc	7034327	T

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