View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17707_high_7 (Length: 237)
Name: NF17707_high_7
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17707_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44105474 - 44105707
Alignment:
| Q |
1 |
tttgaccaataagtttcccaaaaaagagcttcccatttgattcttgtaataatatgtcaacttaattacttccatatgggatatatagtaaagcacgaca |
100 |
Q |
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| T |
44105474 |
tttgaccaataagtttcccaaaaaagagcttcccatttgattcttgtaataatatgtcaacttaattacttccatatgggatatatagtagagcacgaca |
44105573 |
T |
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| Q |
101 |
ctttaggaaaagacatataagcttgcaaattg-gggtaatggtctgaatttttggattcattca------------tcaaccaattctcattcccacttg |
187 |
Q |
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| T |
44105574 |
ctttaggaatagacatataagcttgcaaattgtgggtaatggtctgaatttttggattcattcatcaattctttcgtcaaccaattctcattcccacttg |
44105673 |
T |
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| Q |
188 |
ctatctttaatctacttattcatcataaagttga |
221 |
Q |
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| T |
44105674 |
ctatctttaatctacttattcatcataaagttga |
44105707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 44083809 - 44083930
Alignment:
| Q |
1 |
tttgaccaataagtttcccaaaaaagagcttcccatttgattcttgtaataatatgtcaacttaattacttccatatgggatatatagtaaagcacgaca |
100 |
Q |
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| T |
44083809 |
tttgaccaataagtttctcaaaaaagagcttctcatttgattcttg---taatatgtcaacttaattacttccataacgg----atagtagaacacgaca |
44083901 |
T |
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| Q |
101 |
ctttaggaaaagacatataagcttgcaaa |
129 |
Q |
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| T |
44083902 |
ctttagaaatagacatataagcttgcaaa |
44083930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 44083949 - 44083987
Alignment:
| Q |
124 |
tgcaaattggggtaatggtctgaatttttggattcattcat |
164 |
Q |
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| T |
44083949 |
tgcaaattggggtaatggtctgaa--tttggattcattcat |
44083987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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