View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17707_high_8 (Length: 237)

Name: NF17707_high_8
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17707_high_8
NF17707_high_8
[»] chr7 (3 HSPs)
chr7 (1-221)||(39497062-39497282)
chr7 (48-91)||(39111000-39111043)
chr7 (28-91)||(47356101-47356164)
[»] chr1 (8 HSPs)
chr1 (4-86)||(25509075-25509157)
chr1 (28-88)||(43769736-43769796)
chr1 (1-96)||(19947630-19947725)
chr1 (27-90)||(29706595-29706658)
chr1 (44-91)||(52283595-52283642)
chr1 (44-89)||(5486029-5486074)
chr1 (49-90)||(34974729-34974770)
chr1 (28-88)||(51436664-51436724)
[»] chr3 (10 HSPs)
chr3 (25-90)||(52418330-52418395)
chr3 (24-91)||(30185638-30185705)
chr3 (1-88)||(52564543-52564630)
chr3 (21-91)||(34627772-34627842)
chr3 (1-91)||(55361124-55361214)
chr3 (21-90)||(42672727-42672795)
chr3 (1-91)||(35299765-35299855)
chr3 (25-91)||(46361568-46361634)
chr3 (21-90)||(42997395-42997464)
chr3 (28-89)||(54007579-54007640)
[»] chr5 (2 HSPs)
chr5 (26-91)||(17154425-17154490)
chr5 (55-90)||(35649881-35649916)
[»] chr8 (3 HSPs)
chr8 (24-91)||(32752517-32752584)
chr8 (44-86)||(40517391-40517433)
chr8 (44-89)||(37597371-37597416)
[»] scaffold0005 (1 HSPs)
scaffold0005 (28-90)||(213742-213804)
[»] chr4 (2 HSPs)
chr4 (28-90)||(14603574-14603636)
chr4 (57-91)||(32866416-32866450)
[»] chr2 (6 HSPs)
chr2 (1-91)||(44977390-44977480)
chr2 (44-88)||(43520991-43521035)
chr2 (44-91)||(1907654-1907701)
chr2 (57-91)||(34215409-34215443)
chr2 (48-97)||(30339749-30339798)
chr2 (59-91)||(21313378-21313410)
[»] chr6 (1 HSPs)
chr6 (44-89)||(31749498-31749543)
[»] scaffold0087 (1 HSPs)
scaffold0087 (8-100)||(53243-53335)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39497282 - 39497062
Alignment:
1 tgctttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaagtcattaaa 100  Q
    ||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
39497282 tgctttggtttttgtaccattatttcattttctttgtacattaatggttgtcttataagttatcattgaaatggttgttcaaataacacaactcattaaa 39497183  T
101 aaatagcacaattaatttttaataatttaggctgattcaactttccacttgagtgtatttcaagtaatcttaggagaacattgagtttccttcatcatga 200  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39497182 aaatagcccaattaatttttaataacttaggctgattcaactttccacttgagtgtatttcaagtaatcttaggagaacattgagtttccttcatcatga 39497083  T
201 ggtaacctctagatcaaatct 221  Q
    |||||||||||||||||||||    
39497082 ggtaacctctagatcaaatct 39497062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 39111000 - 39111043
Alignment:
48 ttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||    
39111000 ttgtctcataagttgtcattaaaataattgttcaaataacacaa 39111043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 47356101 - 47356164
Alignment:
28 ttttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||||||||| |||||||||||||   |||||||||||  ||||| ||||| |||||||||||    
47356101 ttttctttataaatcaatggttgtcccgtaagttgtcatacaaatggttgttaaaataacacaa 47356164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 25509157 - 25509075
Alignment:
4 tttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataa 86  Q
    ||||||||||||  || || |||||||||||| || ||||||| |||||| ||||||||||||| ||||||||||||||||||    
25509157 tttggtttttgtgtcaatacctcattttctttgtatatcaatgattgtctaataagttgtcattaaaatgattgttcaaataa 25509075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 43769736 - 43769796
Alignment:
28 ttttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataaca 88  Q
    ||||||||||| || ||||||||||| |||||||||||   |||||||| |||||||||||    
43769736 ttttctttataaattaatggttgtctcataagttgtcaaccaaatgattattcaaataaca 43769796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 19947725 - 19947630
Alignment:
1 tgctttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaagtcat 96  Q
    ||||||||||||||| ||| || ||| ||||||||||| |    ||||||||| | ||||||||||  |||| | |||||||||||||||| ||||    
19947725 tgctttggtttttgtcccaatacctccttttctttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacacaactcat 19947630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 29706658 - 29706595
Alignment:
27 attttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    ||||||||| || ||  |||||| ||||| |||||||||  |||||||||||||||||||||||    
29706658 attttctttgtaaatttatggttatcttaaaagttgtcacagaaatgattgttcaaataacaca 29706595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 52283642 - 52283595
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||||||| |||||||||||||||||||||  || |||||||||||    
52283642 atggttgtctcataagttgtcattgaaatgatcttttaaataacacaa 52283595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 5486029 - 5486074
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataacac 89  Q
    |||||||| |||||||||||||   |||||||||||||||||||||    
5486029 atggttgttttataagttgtcaagtaaatgattgttcaaataacac 5486074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 34974770 - 34974729
Alignment:
49 tgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    |||||||||||||||||   ||||||||||||||||||||||    
34974770 tgtcttataagttgtcacataaatgattgttcaaataacaca 34974729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 51436724 - 51436664
Alignment:
28 ttttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataaca 88  Q
    |||||||| || ||| ||||||||| ||||||||||||   |||| |||||||||||||||    
51436724 ttttctttgtaaatctatggttgtcatataagttgtcaaccaaattattgttcaaataaca 51436664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 52418330 - 52418395
Alignment:
25 tcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
52418330 tcattttctttgtaaatcaatggttgtcatataacttgtcattgaaatggttgttcaaataacaca 52418395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 30185638 - 30185705
Alignment:
24 ctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||||||||| || ||||||  |||||| |||| ||||| |||||||| |||||||||||||||||    
30185638 ctcattttctttgtaaatcaataattgtctcataaattgtctttgaaatggttgttcaaataacacaa 30185705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 52564630 - 52564543
Alignment:
1 tgctttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataaca 88  Q
    |||||||||||| || ||| || ||  |||||||| || ||| |||||||||  |||||||||||| |||||| ||||||||||||||    
52564630 tgctttggttttagtgccaatacctacttttctttgtaaatctatggttgtcccataagttgtcatagaaatggttgttcaaataaca 52564543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 34627842 - 34627772
Alignment:
21 tatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||| ||||||||| || ||  |||||||||||||||||| ||||  |||| ||||||||||||||||||    
34627842 tatcttattttctttgtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacacaa 34627772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 55361214 - 55361124
Alignment:
1 tgctttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||||||||||||  || ||  ||||||||||| || |||||||||||||  ||||||| ||||| ||||  |||||||||||| ||||    
55361214 tgctttggtttttgtgtcaatacttcattttctttgtaaatcaatggttgtcacataagttttcattcaaatagttgttcaaataaaacaa 55361124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 42672795 - 42672727
Alignment:
21 tatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    ||||||||||||||| || |||| ||||||||  ||||||| | |||| |||||||||||||||||||||    
42672795 tatctcattttctttttaaatca-tggttgtcccataagttataattgcaatgattgttcaaataacaca 42672727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 35299855 - 35299765
Alignment:
1 tgctttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||||| |||||||  || || ||||||||||||||| ||  || |||||| || || |||||||| ||||| ||||| |||||||||||    
35299855 tgctttgatttttgtgtcaatacctcattttctttataaattcattgttgtcctaaaaattgtcattaaaatgcttgttgaaataacacaa 35299765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 46361568 - 46361634
Alignment:
25 tcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||||||||| |  ||||||||||||   ||||||||||||| ||||| || ||||||||||||||    
46361568 tcattttctttgtgaatcaatggttgttcaataagttgtcattaaaatggttattcaaataacacaa 46361634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 42997395 - 42997464
Alignment:
21 tatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    ||||| ||||||||||||||    ||||||||||| ||||||||||  |||||| |||| ||||||||||    
42997395 tatcttattttctttatacaattttggttgtcttaaaagttgtcatataaatgaatgtttaaataacaca 42997464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 54007579 - 54007640
Alignment:
28 ttttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacac 89  Q
    ||||||||||| ||  |||||||||||||||||||||||  | ||| | |||||||||||||    
54007579 ttttctttataaatttatggttgtcttataagttgtcatacagatggtcgttcaaataacac 54007640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 17154490 - 17154425
Alignment:
26 cattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||||||||||| ||||||| || || | |||||||||||||||||| |||||||||||||||||    
17154490 cattttctttataaatcaatgtttatcctttaagttgtcattgaaatggttgttcaaataacacaa 17154425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 35649916 - 35649881
Alignment:
55 ataagttgtcattgaaatgattgttcaaataacaca 90  Q
    |||| |||||||||||||||||||||||||||||||    
35649916 ataaattgtcattgaaatgattgttcaaataacaca 35649881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 32752517 - 32752584
Alignment:
24 ctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||||||||| || ||||||| |||||  |||| || ||||||||||| |||||||||||||||||    
32752517 ctcattttctttgtaaatcaatgattgtcccataaattatcattgaaatggttgttcaaataacacaa 32752584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 40517391 - 40517433
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataa 86  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
40517391 atggttgtcttataagatgtcataaaaatgattgttcaaataa 40517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 37597371 - 37597416
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataacac 89  Q
    ||||||||||||||||||||||   | |||||||||||||||||||    
37597371 atggttgtcttataagttgtcaactatatgattgttcaaataacac 37597416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 213804 - 213742
Alignment:
28 ttttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    ||||||||||| ||  |||||||||| | || ||||||| |||||||||||||||||||||||    
213804 ttttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataacaca 213742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 14603574 - 14603636
Alignment:
28 ttttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacaca 90  Q
    ||||||||||| ||  |||||||||| | || ||||||| |||||||||||||||||||||||    
14603574 ttttctttataaatttatggttgtctcaaaaattgtcatggaaatgattgttcaaataacaca 14603636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 32866416 - 32866450
Alignment:
57 aagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||||||||| |||||||||||||||||||||||    
32866416 aagttgtcattaaaatgattgttcaaataacacaa 32866450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 44977480 - 44977390
Alignment:
1 tgctttggtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||||||||||||  || || | |||||||||| || ||  |||||||||| ||||||| || || ||||| |||||||||||||||||    
44977480 tgctttggtttttgtgtcaataccccattttctttgtaaatttatggttgtctcataagttttcgttcaaatggttgttcaaataacacaa 44977390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 43520991 - 43521035
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataaca 88  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||    
43520991 atggttgtcttataggttgtcatgtaaatgattgttcaaataaca 43521035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 1907701 - 1907654
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||||||| || ||||||||||  |||||||||||||||||||||||    
1907701 atggttgtcatacaagttgtcatctaaatgattgttcaaataacacaa 1907654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 34215409 - 34215443
Alignment:
57 aagttgtcattgaaatgattgttcaaataacacaa 91  Q
    ||||| |||||||||||||||||||||||||||||    
34215409 aagttatcattgaaatgattgttcaaataacacaa 34215443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 30339798 - 30339749
Alignment:
48 ttgtcttataagttgtcattgaaatgattgttcaaataacacaagtcatt 97  Q
    |||||| ||||||| ||||| ||||| ||||||||||||||||| |||||    
30339798 ttgtctcataagttctcatttaaatggttgttcaaataacacaactcatt 30339749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 21313410 - 21313378
Alignment:
59 gttgtcattgaaatgattgttcaaataacacaa 91  Q
    |||||||||||||||||| ||||||||||||||    
21313410 gttgtcattgaaatgattattcaaataacacaa 21313378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 31749498 - 31749543
Alignment:
44 atggttgtcttataagttgtcattgaaatgattgttcaaataacac 89  Q
    ||||||||||  |||||||||| | |||||||||||||||||||||    
31749498 atggttgtctcttaagttgtcaatcaaatgattgttcaaataacac 31749543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 53335 - 53243
Alignment:
8 gtttttgttccattatctcattttctttatacatcaatggttgtcttataagttgtcattgaaatgattgttcaaataacacaagtcattaaa 100  Q
    ||||||||  || |||||||||||||||||| ||   ||||||||| | || || ||||  |||| | |||||||||||||||| ||||||||    
53335 gtttttgtgtcaatatctcattttctttataaatttttggttgtctaaaaacttatcatataaataaatgttcaaataacacaactcattaaa 53243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University