View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17707_low_1 (Length: 548)
Name: NF17707_low_1
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17707_low_1 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 35 - 548
Target Start/End: Original strand, 45732611 - 45733123
Alignment:
| Q |
35 |
taaacatgcatcaataagtgtttatgtgtaagtcatttctgcaacaagaaataacataaaagtaaacggtttccatataagatatcctcgagagcttaat |
134 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
45732611 |
taaacatgtatcaataagtgtttatgtgtaagtcatttctgcaacaagaaatagcataaaagtaaacagtttccatataagatatcctcgagagctta-t |
45732709 |
T |
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| Q |
135 |
ggaaataagctgaaaacatcatatgaacatgtcgtaaattatccctataagttcccacaaacggtatccaaaatgattatgttagggaataaacttaaat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45732710 |
ggaaataagctgaaaacatcatatgaacatgtcgtaaattatttctataagttcccataaacggtatccaaaatgattatgttagggaataaacttaaat |
45732809 |
T |
|
| Q |
235 |
aagtgaatccaaacatgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaa |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45732810 |
aagtgaatccaaacatgtcctacacgtgaaaacttaagaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaa |
45732909 |
T |
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| Q |
335 |
atgctaaataaatatgaggagtattatccataaccaaacgagccaaagaaacagcattgacaacggtgctaagaccagaaacagcaccacatttcatagt |
434 |
Q |
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| T |
45732910 |
aagctaaataaatatgaggagtattatccataaccaaacgagccaaagaaatagcattgacaacggtgctaagaccagaaacagcaccacatttcatagt |
45733009 |
T |
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| Q |
435 |
gtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgttgaagtgtggaatattctccaactcacga |
534 |
Q |
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| T |
45733010 |
gtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgttgaagtgtggaatattctccaactcacga |
45733109 |
T |
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| Q |
535 |
acctatgatcaatg |
548 |
Q |
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|||||||||||||| |
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| T |
45733110 |
acctatgatcaatg |
45733123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 272 - 548
Target Start/End: Original strand, 45738317 - 45738593
Alignment:
| Q |
272 |
gaaaatgagattggaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaatgctaaataaatatgaggagtattatccataaccaa |
371 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||| |
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| T |
45738317 |
gaaaatgagttaagaaaagaaataaaccaacttgttgtcttgcaaaatcctcagctccatcaaaagccaaataaatatgaggcgtattgtccataaccaa |
45738416 |
T |
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| Q |
372 |
acgagccaaagaaacagcattgacaacggtgctaagaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtg |
471 |
Q |
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||||||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45738417 |
acgagccaaagaaacagcattaacgacagtagtaagaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtg |
45738516 |
T |
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| Q |
472 |
cctttgttggtaagaacagaacctcttccagcgttgaagtgtggaatattctccaactcacgaacctatgatcaatg |
548 |
Q |
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| T |
45738517 |
cctttgttggtaagaacagaacctcttccagcgttgaagtgtggaatattctccaactcacgaacctatgaacaatg |
45738593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 45737976 - 45738167
Alignment:
| Q |
1 |
tttggataaataacttaactaaacatgtataacataaacatgcatcaataagtgtttatgtgtaagtcatttctgcaacaagaaataacataaaagt-aa |
99 |
Q |
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|||||||||||||||||| | | | |||||||||||| || |||||||| || |||||| ||||||||| || ||||||||||||||| ||||| || |
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| T |
45737976 |
tttggataaataacttaattgagcgcttataacataaacgtgtatcaataaatgcttatgtataagtcattcctacaacaagaaataacactaaagtcaa |
45738075 |
T |
|
| Q |
100 |
acggtttccatataagatatcctc----gagagcttaatggaaataagctgaaaacatcatatgaacatgtcgtaaattatccctataagttc |
188 |
Q |
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| T |
45738076 |
actgtttccatataagctatccttccttgagagctta-tggaaataagctgaaaacatcttatgagcttgtcgtaaattatttctataagttc |
45738167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 8469412 - 8469371
Alignment:
| Q |
133 |
atggaaataagctgaaaacatcatatgaacatgtcgtaaatt |
174 |
Q |
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| T |
8469412 |
atggaaataagctgaaaacaacttatgaacatgtcataaatt |
8469371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 7694066 - 7694011
Alignment:
| Q |
111 |
ataagatatcctcgagagcttaatggaaataagctgaaaacatcatatgaacatgtc |
167 |
Q |
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||||| |||||| ||||| ||| ||||||||||||||||||| | |||||||||||| |
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| T |
7694066 |
ataagttatcctggagagttta-tggaaataagctgaaaacaacttatgaacatgtc |
7694011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 20672763 - 20672819
Alignment:
| Q |
110 |
tataagatatcctcgagagcttaatggaaataagctgaaaacatcatatgaacatgtc |
167 |
Q |
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| T |
20672763 |
tataagctatcctggagagctta-tgaaaataagctgaaaacagcttatgaacatgtc |
20672819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 36638761 - 36638816
Alignment:
| Q |
111 |
ataagatatcctcgagagcttaatggaaataagctgaaaacatcatatgaacatgtc |
167 |
Q |
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||||| |||||| ||||||||| ||||||||||||||||| | | |||||||||||| |
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| T |
36638761 |
ataagttatcctagagagctta-tggaaataagctgaaaaaagcttatgaacatgtc |
36638816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 24785219 - 24785274
Alignment:
| Q |
111 |
ataagatatcctcgagagcttaatggaaataagctgaaaacatcatatgaacatgtc |
167 |
Q |
| |
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||||| |||||||||||||||| || ||||||||| |||||| | |||||||||||| |
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| T |
24785219 |
ataagctatcctcgagagctta-tgtaaataagctaaaaacaacttatgaacatgtc |
24785274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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