View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17707_low_10 (Length: 237)
Name: NF17707_low_10
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17707_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5998523 - 5998739
Alignment:
| Q |
1 |
ctatatatattaaaataattaaataaatacaagttggtctacaaaatgatgcttatatgataacacatttttatgtacacaataatttaaatatcacata |
100 |
Q |
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| T |
5998523 |
ctatatatattaaaataattaaataaatacaagttggtctacaaaatgat----atatgataacacatttttatgtacacaataatttaaatatcacata |
5998618 |
T |
|
| Q |
101 |
attaaggaaattataatcctagggacaaaaataataataatctctaggaagactcatgaaatcagcaattgagtttctcttcttttgaatatgaattttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998619 |
attaaggaaattataatcctagggacaaaaataataataatctctaggaagactcatgaaatcagcaattgagtttctcttcttttgaatatgaattttt |
5998718 |
T |
|
| Q |
201 |
gcaatgagcaattgcagattg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
5998719 |
gcaatgagcaattgcagattg |
5998739 |
T |
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