View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17707_low_12 (Length: 212)

Name: NF17707_low_12
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17707_low_12
NF17707_low_12
[»] chr1 (18 HSPs)
chr1 (9-193)||(27782300-27782484)
chr1 (10-193)||(27777478-27777661)
chr1 (10-162)||(27780995-27781156)
chr1 (123-192)||(38226961-38227030)
chr1 (11-87)||(38227213-38227289)
chr1 (22-93)||(38227135-38227206)
chr1 (22-92)||(38226992-38227062)
chr1 (22-93)||(38227063-38227134)
chr1 (57-162)||(27781120-27781234)
chr1 (129-186)||(17663585-17663642)
chr1 (54-107)||(27781156-27781209)
chr1 (25-93)||(17663550-17663618)
chr1 (129-189)||(21899127-21899187)
chr1 (136-186)||(17700337-17700387)
chr1 (54-107)||(27781195-27781248)
chr1 (30-93)||(17700361-17700424)
chr1 (121-176)||(38227049-38227104)
chr1 (48-85)||(21079010-21079047)
[»] chr4 (6 HSPs)
chr4 (10-93)||(35250178-35250261)
chr4 (123-193)||(35250147-35250217)
chr4 (129-189)||(51220007-51220067)
chr4 (10-93)||(51220034-51220117)
chr4 (10-87)||(51220827-51220904)
chr4 (129-188)||(51220795-51220854)
[»] chr7 (2 HSPs)
chr7 (10-92)||(440929-441011)
chr7 (123-189)||(440901-440967)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 27782484 - 27782300
Alignment:
Q  9 tgagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttgag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782484 tgagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttgag 27782385  T
Q  109 cttccatgtgatgatgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtct 193  Q
    ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27782384 ctttcaagtgatgatgtgaagaatttagatttgaacgagttttcaagtgatgattgtgaagatgaaaccaattagtgtctcgtct 27782300  T

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Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 27777478 - 27777661
Alignment:
Q  10 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttgagc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777478 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttgagc 27777577  T
Q  110 ttccatgtgatgatgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtct 193  Q
    || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27777578 ttacaagtgatgatgtgaagaatttagatttgaacgagtttacaagtgatgattgtgaagatgaaaccaattagtgtctcgtct 27777661  T

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Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 27780995 - 27781156
Alignment:
Q  10 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaatttt---- 105  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||        
T  27780995 gagaagaagattaatgaaggtgaaacaaaattagggtcaaaagttgtgaagaattttgatttggacgagcttccaagtgatgatatgaagaattttgatt 27781094  T
Q  106 -----gagcttccatgtgatgatgtgaagaatttagatttgaacgagtttccaagtgatgat 162  Q
         ||||||||| ||||||||| ||||||||| ||||||||||||| ||||| |||||||    
T  27781095 tgaacgagcttccaagtgatgatgcgaagaattttgatttgaacgagtatccaattgatgat 27781156  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 38227030 - 38226961
Alignment:
Q  123 tgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtc 192  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||    
T  38227030 tgtgaagaatttagatttgaacgagcttccaagtgatgagtttgaagataaaaccaattagtgtctcgtc 38226961  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 38227289 - 38227213
Alignment:
Q  11 agaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 87  Q
    |||||| ||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  38227289 agaagacgattaatgaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagt 38227213  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 38227206 - 38227135
Alignment:
Q  22 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 93  Q
    |||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  38227206 aatgaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgat 38227135  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 38227062 - 38226992
Alignment:
Q  22 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatga 92  Q
    |||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  38227062 aatgaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatga 38226992  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 38227134 - 38227063
Alignment:
Q  22 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 93  Q
    |||||||||||| | ||| |||||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  38227134 aatgaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgat 38227063  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 27781120 - 27781234
Alignment:
Q  57 gaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga---------gcttccatgtgatgatgtgaagaatttagatttgaacgag 147  Q
    ||||||||||||||||||||||  ||||| | ||||||||| |||||||||         ||||||| ||||||||||||||||||| ||||||||||||    
T  27781120 gaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttgatttgaacaagcttccaagtgatgatgtgaagaattttgatttgaacgag 27781219  T
Q  148 tttccaagtgatgat 162  Q
    | ||||| |||||||    
T  27781220 tatccaattgatgat 27781234  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 17663585 - 17663642
Alignment:
Q  129 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgt 186  Q
    |||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  17663585 gaattttgatttgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgt 17663642  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 27781156 - 27781209
Alignment:
Q  54 tgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga 107  Q
    |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  27781156 tgtgaagaattttgatttgaacaagcttccaagtgatgatgtgaagaattttga 27781209  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 17663550 - 17663618
Alignment:
Q  25 gaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 93  Q
    |||| |||||| ||| ||||||||| |||||| | ||||||||||||||| |||||||||||| |||||    
T  17663550 gaagatgaaaccgaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgat 17663618  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 21899187 - 21899127
Alignment:
Q  129 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctc 189  Q
    |||||| |||||||| ||| || ||||||| |||| |||||||||||||||||||||||||    
T  21899187 gaattttgatttgaatgagatttcaagtgacgattttgaagatgaaaccaattagtgtctc 21899127  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 17700387 - 17700337
Alignment:
Q  136 gatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgt 186  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||||    
T  17700387 gatttgaatgagcttccaagtgatgattttgaagatgaaaacaattagtgt 17700337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 27781195 - 27781248
Alignment:
Q  54 tgtgaagaattttgatttgaacgagcttccaagtaatgatgtgatgaattttga 107  Q
    |||||||||||||||||||||||||  ||||| | ||||||||| |||||||||    
T  27781195 tgtgaagaattttgatttgaacgagtatccaattgatgatgtgaagaattttga 27781248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 17700424 - 17700361
Alignment:
Q  30 tgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 93  Q
    |||||| ||| ||||||||| |||||| | |||| |||||||||| |||||||||||| |||||    
T  17700424 tgaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgat 17700361  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 38227104 - 38227049
Alignment:
Q  121 gatgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaac 176  Q
    |||||||||||||| |||||||||||  ||||||||||||||  ||||| ||||||    
T  38227104 gatgtgaagaattttgatttgaacgaacttccaagtgatgataatgaaggtgaaac 38227049  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 21079010 - 21079047
Alignment:
Q  48 aaaagttgtgaagaattttgatttgaacgagcttccaa 85  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  21079010 aaaagttgttaggaattttgatttgaacgagcttccaa 21079047  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 35250261 - 35250178
Alignment:
Q  10 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 93  Q
    ||||||||||| ||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  35250261 gagaagaagattaatgaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgat 35250178  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 35250217 - 35250147
Alignment:
Q  123 tgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctcgtct 193  Q
    |||||||||||| |||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||    
T  35250217 tgtgaagaattttgatttgaacgagcttgcaagtgatgattttgaagatgaatccaattagtgtctcgtct 35250147  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 51220067 - 51220007
Alignment:
Q  129 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctc 189  Q
    |||||| |||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||    
T  51220067 gaattttgattcgaatgagcttccaagtgatgattttgaagatgaaaccaattagtgtctc 51220007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 51220117 - 51220034
Alignment:
Q  10 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 93  Q
    ||||||||||| || ||| ||||||| ||| ||||||||| |||||| | ||||||||||| ||| |||||||||||| |||||    
T  51220117 gagaagaagattaacgaaagtgaaactgaattagggtcaatagttgttatgaattttgattcgaatgagcttccaagtgatgat 51220034  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 51220904 - 51220827
Alignment:
Q  10 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagt 87  Q
    ||||||||||| || ||| ||||||| ||| ||||||||| | |||| | ||||||||| ||||||||||||||||||    
T  51220904 gagaagaagattaacgaaagtgaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagt 51220827  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 51220854 - 51220795
Alignment:
Q  129 gaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtct 188  Q
    |||||| || ||||||||| |||||||||||| || ||||||||||||||| ||||||||    
T  51220854 gaattttgaattgaacgagcttccaagtgatggttttgaagatgaaaccaactagtgtct 51220795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 441011 - 440929
Alignment:
Q  10 gagaagaagatgaatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatga 92  Q
    ||||||| ||| ||||||||||  || ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  441011 gagaagatgattaatgaaggtgttactgaattagggccaaaagttgtgaagaattttgatttgaacgagcttccaagtgatga 440929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 440967 - 440901
Alignment:
Q  123 tgtgaagaatttagatttgaacgagtttccaagtgatgattgtgaagatgaaaccaattagtgtctc 189  Q
    |||||||||||| |||||||||||| ||||||||||||| | |||||||||||| ||||||||||||    
T  440967 tgtgaagaattttgatttgaacgagcttccaagtgatgactttgaagatgaaactaattagtgtctc 440901  T

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