View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17707_low_2 (Length: 506)
Name: NF17707_low_2
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17707_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 63 - 281
Target Start/End: Original strand, 54771558 - 54771776
Alignment:
| Q |
63 |
gggtctataaagaaggtggcattgagtgcctcgagcaagttcaaaaattcattcaccaagaaggggaggaagcacagcagagttatgtctatctgtattg |
162 |
Q |
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| T |
54771558 |
gggtctataaagaaggtggcattgagtgcctcgagcaagttcaaaaattcattcaccaagaaggggaggaagcacagcagagttatgtctatctgtattg |
54771657 |
T |
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| Q |
163 |
aggatagttttgatgcagaagagttacaggcagttgatgcttttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatat |
262 |
Q |
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| T |
54771658 |
aggatagttttgatgcagaagagttacaggcagttgatgctcttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatat |
54771757 |
T |
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| Q |
263 |
gatgctaaggtaacatttg |
281 |
Q |
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| T |
54771758 |
gatgctaaggtaacatttg |
54771776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 296 - 465
Target Start/End: Original strand, 54771824 - 54771993
Alignment:
| Q |
296 |
tgtttggtttgactttttcctttataaattgattcaactttgaatatcaattctatcaacaacnnnnnnntatttccaacgaacgtggttatggaatcaa |
395 |
Q |
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| T |
54771824 |
tgtttggtttgactttttcctttataaattgattcaactttgaatatcaattctatcaacaacaaaaaaatatttccaactaacgtggtgatggaatcaa |
54771923 |
T |
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| Q |
396 |
ttctcaaatttattgggatgtatgcacacacacaaacaattcttatccaaacataaattgataaaaataa |
465 |
Q |
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| T |
54771924 |
ttctcaaatttattgggatgcatgcacacacacaaacaattcttatccaaacataaattgataaaaataa |
54771993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 54771512 - 54771540
Alignment:
| Q |
17 |
aggtcatgagatggaacattctgaggatg |
45 |
Q |
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| T |
54771512 |
aggtcatgagatggaacattctgaggatg |
54771540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 26638407 - 26638503
Alignment:
| Q |
178 |
cagaagagttacaggcagttgatgcttttcgacaaacacttatcttggaagagctcttaccctcaaagcatgatgatcctcatatgatgctaaggta |
274 |
Q |
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| T |
26638407 |
cagaagagttgcaggcaatcgatgcttttcgtcaagcacttatcctagaagaactattaccctcaaaacatgatgatcatcatatgatgctaaggta |
26638503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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