View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17707_low_4 (Length: 442)
Name: NF17707_low_4
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17707_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4374315 - 4374089
Alignment:
| Q |
1 |
agtgaaaagacttggaattaaaattgcgagtaaaagcaaatacagtaaaaactcctcgaaagttttgtactaacaaaattcgtcaaacataacatttact |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4374315 |
agtgaaaagacttggaattaaa-ttgcgagtaaaagcaaatacagtaaaaactccttgaaagttttgtactaacaaaattcgtcaaacataacatttact |
4374217 |
T |
|
| Q |
101 |
ttcacctttagaacatcctaatataagtcttgaaaaacatagttaaactcatccaatttcggactattgttaccatccnnnnnnncagcatttatttatc |
200 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4374216 |
tccacctttagaacatcccaatataagtcttgaaaaacatagttaaactcatccaatttcggactattgttaccatccaaaaaaacagcatttatttatc |
4374117 |
T |
|
| Q |
201 |
tcctctcctttaaaaatggccttaaaag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4374116 |
tcctctcctttaaaaatggccttaaaag |
4374089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 249 - 426
Target Start/End: Complemental strand, 4374065 - 4373893
Alignment:
| Q |
249 |
attaattactttaaatttaatctcttgaatacccagaaagaatgtcaagaattcaagatgtttatcttttaatcaaagatgccacgattttcttcttttt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4374065 |
attaattactttaaatttaatctcttgaatacccagaa----tgtcaagaattcaagatatttatcttt-aatcaaagatgccacgattttcttcttttt |
4373971 |
T |
|
| Q |
349 |
tgcaacaaaacaaaacctccccgacatcctacctaataccccgacattcccttcctcaatattttctctatctattat |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4373970 |
tgcaacaaaacaaaacctccccgacatcctacctaataccccgacattcccttcctcaatattttctctatctattat |
4373893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University