View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17707_low_6 (Length: 272)
Name: NF17707_low_6
Description: NF17707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17707_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 14136110 - 14135844
Alignment:
| Q |
1 |
atcaactgagctaagctcacaaggaatgcaggtacaaatattaaaataacattgtannnnnnnactcattcccatcacgtgtgtacttcaagacaaatca |
100 |
Q |
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| T |
14136110 |
atcaactgagctaagctcacgaggaatgcagatacaaatattaaagtaacattgtatttttttactcattcccatcacgtgtgtacttcaagacaaatca |
14136011 |
T |
|
| Q |
101 |
agagttgtgtcgaccaaatatctacttctaaacaaatcataagtttttataccgtctaaatctgcacttacaatatcatgtgatttgttagacatgtggg |
200 |
Q |
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| T |
14136010 |
agagttgtgtcgaccaaatatctacttctaaacaaatcataagtttttataccgtctaaatctgcacttacaatatcatgtgatttgttagacatgtggg |
14135911 |
T |
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| Q |
201 |
tgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatcctttg |
267 |
Q |
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| T |
14135910 |
tgtgtttgatggtcaggatagaaaatcaggataggaaaaatatatcatatcttgttttaatcctttg |
14135844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 4044157 - 4044090
Alignment:
| Q |
200 |
gtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatcctttg |
267 |
Q |
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| T |
4044157 |
gtgcgtttgatggttaggatagagagtcaggataagaaatatatatcatatcctgttttaatcttttg |
4044090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 17828930 - 17828863
Alignment:
| Q |
198 |
gggtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatcctt |
265 |
Q |
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| T |
17828930 |
gggtgcgtttgatggtcaggatagagagtcaggatatgaaagatatatcatattatgttttaatcctt |
17828863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 24429443 - 24429385
Alignment:
| Q |
204 |
gtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctgttttaatc |
262 |
Q |
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| T |
24429443 |
gtttgatggtcaggatagagagttaagatatgacatatctatcatatcctgtttaaatc |
24429385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 40619896 - 40619840
Alignment:
| Q |
198 |
gggtgcgtttgatggtcaggatagagagttaggataggaaaaatatatcatatcctg |
254 |
Q |
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| T |
40619896 |
gggtgcgtttgatggtcaggatagagagataggatatgatacattaatcatatcctg |
40619840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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