View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17708_high_2 (Length: 648)
Name: NF17708_high_2
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17708_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 44 - 466
Target Start/End: Complemental strand, 4555425 - 4555003
Alignment:
| Q |
44 |
ctgattaacttttctgaagcttggtttctttcttccaaattcatcaatggatggagccttgagaagctctctctttcgtattcttcgaacaggtattgtt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555425 |
ctgattaacttttctgaagcttggtttctttcttccaaattcatcaatggatggagccttgagaagctctctctttcgtattcttcgaacaggtattgtt |
4555326 |
T |
|
| Q |
144 |
ccttttggacaacttccacttttctgccatacttgttgggaagttaatttcacatatgacttttcatccctttccttcatcatggcactcttagttttat |
243 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555325 |
ccctttggacaacttccacttttctgccatacttgttgggaagttaatttcacatatgacttttcatccctttccttcatcatggcactcttagttttat |
4555226 |
T |
|
| Q |
244 |
tactagtgcttactgtggtgtccttcttaactgaattgtaactgggagccatctgattacatatttatatgaagattcatagagtagtattagtgatttg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555225 |
tactagtgcttactgtggtgtccttcttaactgaattgtaactgggagccatctgattacatatttatatgaagattcatagagtagtattagtgatttg |
4555126 |
T |
|
| Q |
344 |
gcaataagaaaacatgtagtaattactaattagtgtgttttgttttgcaggggcaaaaattgattttgacgaaagtattttgattaaaaatgaattgagt |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4555125 |
gcaataagaaaacatgtagtaattactaattagtgtgttttgttttgcaggggcaaaaattgattttgacgaaagtattttgattaaaaatgagttgagt |
4555026 |
T |
|
| Q |
444 |
gtaaaattatttacttatgttca |
466 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4555025 |
gtaaaattatttacttatgttca |
4555003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 542 - 626
Target Start/End: Complemental strand, 4554915 - 4554831
Alignment:
| Q |
542 |
tagaataaactttggatgtccaaagcaatttactcaagaacacttaaacatgtcaaagttggccaggcaagttccatgcggagat |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4554915 |
tagaataaactttggatgtccaaagcaatttactcaagaacacttaaacatgtcaaagctggccaggcaagttccatgcggagat |
4554831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 47947884 - 47947941
Alignment:
| Q |
116 |
ctttcgtattcttcgaacaggtattgttccttttggacaacttccacttttctgccat |
173 |
Q |
| |
|
|||||| ||||| |||| ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
47947884 |
ctttcgaattctacgaataggtacagtttcttttggacaacttccacttttctgccat |
47947941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University