View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17708_high_6 (Length: 270)
Name: NF17708_high_6
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17708_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 43002468 - 43002708
Alignment:
| Q |
14 |
aggtggaaaagaaagaacagaaaaagagtttgaggctttagctaaaggagctggatttgaaggatttcaaattgcatgttgtgctttcaacatgtatgtc |
113 |
Q |
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| T |
43002468 |
aggtggaaaagaaagaacagaaaaagagtttgaggctttagctaaaggagctggatttgaaggatttcaaattgcatgttgtgctttcaacatgtatgtc |
43002567 |
T |
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| Q |
114 |
atggaatttcttaagaatgcttaacttgatatctttttgtgtcaattgaatctttggattaaagaaataagttgtttgtattttctgttataaaataaaa |
213 |
Q |
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| T |
43002568 |
atggaatttcttaagaatgcttaacttgatatctttttgtgtcaattgtatctttggattaatgaaataagttgtttgtattttctgttataaaataaaa |
43002667 |
T |
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| Q |
214 |
gttgctggtatttgttaaagatcggtgttgtcggtcgttac |
254 |
Q |
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| T |
43002668 |
gttgctggtatttgttaaagatcggtgttgtcggtcgttac |
43002708 |
T |
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