View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17708_low_1 (Length: 871)

Name: NF17708_low_1
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17708_low_1
NF17708_low_1
[»] chr7 (7 HSPs)
chr7 (495-850)||(6002871-6003229)
chr7 (148-441)||(6003283-6003580)
chr7 (148-247)||(2570423-2570522)
chr7 (302-396)||(2570114-2570208)
chr7 (294-394)||(27993561-27993661)
chr7 (294-386)||(46262144-46262236)
chr7 (214-353)||(25153217-25153362)
[»] chr4 (7 HSPs)
chr4 (148-396)||(26500150-26500402)
chr4 (148-396)||(1799100-1799359)
chr4 (212-397)||(10388514-10388703)
chr4 (309-394)||(37707395-37707480)
chr4 (272-396)||(40813783-40813908)
chr4 (212-381)||(17416448-17416621)
chr4 (148-188)||(6760858-6760898)
[»] chr8 (7 HSPs)
chr8 (148-396)||(38387872-38388124)
chr8 (148-393)||(46101-46351)
chr8 (225-395)||(1579093-1579268)
chr8 (158-277)||(4489610-4489733)
chr8 (294-396)||(40531188-40531288)
chr8 (294-396)||(544375-544477)
chr8 (202-245)||(22915941-22915984)
[»] chr3 (9 HSPs)
chr3 (150-395)||(17324034-17324283)
chr3 (148-396)||(16285020-16285272)
chr3 (148-394)||(45181550-45181800)
chr3 (148-248)||(23087617-23087717)
chr3 (294-396)||(2782094-2782196)
chr3 (294-394)||(3968575-3968675)
chr3 (294-394)||(4000130-4000230)
chr3 (304-388)||(18983225-18983309)
chr3 (301-354)||(30127258-30127311)
[»] chr2 (6 HSPs)
chr2 (152-395)||(37128802-37129049)
chr2 (148-396)||(41958187-41958438)
chr2 (212-382)||(4397369-4397543)
chr2 (210-396)||(42048152-42048343)
chr2 (300-395)||(4162051-4162145)
chr2 (304-374)||(23665439-23665509)
[»] chr5 (12 HSPs)
chr5 (148-382)||(39368830-39369067)
chr5 (148-396)||(35847051-35847304)
chr5 (148-395)||(42742213-42742461)
chr5 (148-396)||(3204238-3204488)
chr5 (148-348)||(29685828-29686032)
chr5 (148-305)||(25362318-25362479)
chr5 (148-388)||(2707023-2707267)
chr5 (148-247)||(17218822-17218921)
chr5 (309-396)||(18557491-18557577)
chr5 (155-277)||(2334625-2334752)
chr5 (148-183)||(1223089-1223124)
chr5 (301-339)||(31721688-31721726)
[»] chr1 (5 HSPs)
chr1 (152-396)||(38709907-38710154)
chr1 (152-349)||(4397349-4397550)
chr1 (148-396)||(4391561-4391814)
chr1 (300-395)||(38564857-38564951)
chr1 (294-394)||(13987577-13987677)
[»] chr6 (1 HSPs)
chr6 (294-394)||(7546454-7546554)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 495 - 850
Target Start/End: Complemental strand, 6003229 - 6002871
Alignment:
Q  495 tctctaacaattgatgccctacacacaaagctaaacgctctttggaacgttcttggaaaatgatcgcttacacctattggtaagnnnnnnnnnnnnnnnn 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  6003229 tctctaacaattgatgccctacacacaaagctaaacgctctttggaacgttcttggaaaatgatcgcttacacctattggtaagttttttttttttttca 6003130  T
Q  595 nnnnnnnnnattgaaacctaataagggtgattgcggtagaataatggagtctttctcaaggtattcttcactcatttttcttagacactagacttcaatc 694  Q
             |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003129 ttttcatttattgaaacctaataagggtgattgcggtagaataagtgagtctttctcaaggtattcttcactcatttttcttagacactagacttcaatc 6003030  T
Q  695 cgcatttgattaaaaatactaatgtccaacgttaggttagaattcttggtcttcctattgaatattggaggtcattaattctgttattttgcagtcgcaa 794  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003029 cgcatttgattaaaaacactaatgtccaacgttaagttagaattcttggtcttcctattgaatattggaggtcattaattctgttattttgcagtcgcaa 6002930  T
Q  795 ggtatttgaatccatcttgtccttttggaagctactagta---gtagattttatggata 850  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  6002929 ggtatttgaatccatcttgtccttttggaagctactagtagtagtagattttatggata 6002871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 148 - 441
Target Start/End: Complemental strand, 6003580 - 6003283
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6003580 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatattgatgttgcttcaaacgttcagcttcgaccaccactcaagt 6003481  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    ||||||||    |||| |||||||||| |||||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  6003480 ttcagtctatcggaggcgacatcacaacagcctaaaaggacctgagacacaaatttgcttccgacctcgaatcaaaagcgatcggcccataagactcctg 6003381  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacaccttttaagttatttccttctccttgtttcaatgggacgtagtagtatc 441  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6003380 acacaaatcaaaaaggcatcactcaattcacaaaccaccggagcagacaccttttaagttacttccttctccttgtttcaatgggacgtagtagtatc 6003283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 2570522 - 2570423
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||    
T  2570522 taacaacaacacctcaaagaaccaacaccgccaacagtgatcaaaaaggcacccgaaagtgattttgcttcaaaggttcagcttcgaccaccactcaagt 2570423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 2570208 - 2570114
Alignment:
Q  302 tcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    ||||||||||||||||||||||||  |||||  ||||||||||||||| ||||||||||| | |||||||||| | | ||| |||||||||||||    
T  2570208 tcccgacctcgaatcaaaagcgataagcccaccagactcctgacacaagtcaaaaaggcacccctcaactcacgagcaaccagagcaaacacctt 2570114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 27993561 - 27993661
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| |||||||| ||||||||||||| |||||| |||  ||||||| ||||||||||| |||| || | |||||||||| ||||||| ||||||||||    
T  27993561 aaactagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactcacgaaccaccagagcaaacac 27993660  T
Q  394 c 394  Q
    |    
T  27993661 c 27993661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 294 - 386
Target Start/End: Original strand, 46262144 - 46262236
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggag 386  Q
    ||||| |||||||| ||||||||||||| ||||||||||  |||||||  |||| ||||||||||||| | |||||||||| || ||||||||    
T  46262144 aaactagctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacaccaatcaaaaaggcacccctcaactcacgaatcaccggag 46262236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 25153362 - 25153217
Alignment:
Q  214 gcttcaaacgttcagcttcgaccaccactcaagtttcagtct----gaggagacatcacaatagcctagaagaacctgag--acacaaacttgctcccga 307  Q
    ||||||||| ||||| ||||||||||| |||| || | ||||    ||||||||| || ||||| ||| |||||||| ||  | | ||||| |||  |||    
T  25153362 gcttcaaacattcagattcgaccaccagtcaacttccggtctattggaggagacaccaaaatagtctaaaagaacctaagtaagaaaaactggctttcga 25153263  T
Q  308 cctcgaatcaaaagcgatcggcccataagactcctgacacaaatca 353  Q
     ||||||||||||| |||||| |||  ||||||| |||||||||||    
T  25153262 tctcgaatcaaaagtgatcggtccaccagactcccgacacaaatca 25153217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 4e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 148 - 396
Target Start/End: Original strand, 26500150 - 26500402
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    ||||||||||||||||||||||||||||| ||||||||| | || || ||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  26500150 taacaacagctcctcaaagaaccaacaccaccaacagtggtgaataaagcacccgatattgattttgcttcaaacgttcagcttcgaccaccactcaagt 26500249  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | | ||||    ||||||||||||||| |||||| ||| || |||| ||||||||||||||||||||||||||||||||||||| |||| |||||| | |    
T  26500250 tccggtctatcggaggagacatcacaacagcctaaaaggacttgagtcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagacttccg 26500349  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    |||||| ||||||||||| | |||||||||| ||||||  ||||| |||||||    
T  26500350 acacaagtcaaaaaggcacccctcaactcacgaaccactagagcatacacctt 26500402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 1799359 - 1799100
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgcc-------aacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccacca 240  Q
    |||||||||||||||||||||||||||| |||       ||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  1799359 taacaacagctcctcaaagaaccaacactgccgtctgccaacagtgatcaaaaaggcacccgataatgatgttgcttcaaacgatcagcttcgaccacca 1799260  T
Q  241 ctcaagtttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataag 336  Q
    ||||| |||  || |    |||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||| | || | | |||    
T  1799259 ctcaaattttggtttatcggaggagacatcacaatagcctaaaaggacctgagacacaaacttgctcctgacctagaatcaaaagcgtttggtcaacaag 1799160  T
Q  337 actcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    |||||| |||||| ||||||||||| | |||||||||| ||||||||||||| |||||||    
T  1799159 actccttacacaagtcaaaaaggcacccctcaactcacgaaccaccggagcagacacctt 1799100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 212 - 397
Target Start/End: Complemental strand, 10388703 - 10388514
Alignment:
Q  212 ttgcttcaaacgttcagcttcgaccaccactcaagtttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccga 307  Q
    |||||||||||||| |||||||||||||||||||| | | ||||    ||||||||||||||| |||||| ||| ||||||| || ||||||||||||||    
T  10388703 ttgcttcaaacgtttagcttcgaccaccactcaagatccggtctatcagaggagacatcacaacagcctaaaaggacctgagtcataaacttgctcccga 10388604  T
Q  308 cctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacaccttt 397  Q
    |||||||||||||| |||||||||| |||||||  ||| ||| |||||||| |||| |||||||||| || |||  ||||| ||||||||    
T  10388603 cctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtcaaaaagacatccctcaactcacgaagcactagagcagacaccttt 10388514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 309 - 394
Target Start/End: Original strand, 37707395 - 37707480
Alignment:
Q  309 ctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacc 394  Q
    ||||||||||||| ||||||||||  ||||||| |||||| | |||||||||| | |||||||||| ||||||| ||||| |||||    
T  37707395 ctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 37707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 272 - 396
Target Start/End: Original strand, 40813783 - 40813908
Alignment:
Q  272 agcctagaagaacctgagacacaaacttg-ctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaac 370  Q
    |||||| ||||||||||| || ||| ||| ||||||| ||||||||||||| ||||||||||  ||||||| ||| ||||||| ||||||| |  ||||     
T  40813783 agcctaaaagaacctgagtcaaaaaattggctcccgatctcgaatcaaaagtgatcggcccaccagactcccgacgcaaatcataaaggcacccttcaat 40813882  T
Q  371 tcacaaaccaccggagcaaacacctt 396  Q
    |||| ||||||  ||||| |||||||    
T  40813883 tcacgaaccactagagcagacacctt 40813908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 381
Target Start/End: Original strand, 17416448 - 17416621
Alignment:
Q  212 ttgcttcaaacgttcagcttcgaccaccactcaagtt----tcagtctgaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccga 307  Q
    ||||||||||| ||||||||||||||||||||||  |    || ||| ||||||||||||||| |||||| ||| || |  |  | ||||| ||||| ||    
T  17416448 ttgcttcaaacattcagcttcgaccaccactcaacatctggtctgtcggaggagacatcacaaaagcctaaaaggacataggcaaaaaactagctcctga 17416547  T
Q  308 cctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccac 381  Q
     ||||||||||||| ||||||||||  || |||  ||||| |||||   ||||| | |||||||||| ||||||    
T  17416548 tctcgaatcaaaagtgatcggcccactaggctctcgacaccaatcatttaggcacccctcaactcacgaaccac 17416621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 6760898 - 6760858
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgat 188  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  6760898 taacaatagctcatcaaagaaccaacaccgccaacagtgat 6760858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 3e-63; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 38388124 - 38387872
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| |||||| |||||||||||||  |||||||||| ||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38388124 taacaacaactcctcgaagaaccaacaccatcaacagtgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagt 38388025  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
       |||||    || ||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| |||||||||| ||| |||||| |||||||| |    
T  38388024 cctagtctatcagatgagacatcacaatagcctaaaaggacctgagtcacaaacttgctcctgaccttgaatcaaaagtgattggcccacaagactcccg 38387925  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    ||| || ||||||||||| | |||||||||| ||||||| |||||||||||||    
T  38387924 acataagtcaaaaaggcacccctcaactcacgaaccaccagagcaaacacctt 38387872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 148 - 393
Target Start/End: Original strand, 46101 - 46351
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| ||||||||||||||||||| | ||||| |||| ||   | | |||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  46101 taacaacaactcctcaaagaaccaacactgtcaacaatgatcaattcgacgcctgatagtgattttgcttcaaacgttcaactttgaccaccactcaagt 46200  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | ||||||    ||||||||||||||| | |||| ||| ||||||| || ||||||||||||||||| |||||||||||||| |||||| |||||||| |    
T  46201 tccagtctatcggaggagacatcacaacaacctaaaaggacctgagtcagaaacttgctcccgacctggaatcaaaagcgattggcccacaagactcccg 46300  T
Q  344 acacaaatcaaaaaggcatcactcaactcac-aaaccaccggagcaaacac 393  Q
    |||||| ||||||||||| | |||||||||| || ||||||||||| ||||    
T  46301 acacaagtcaaaaaggcacccctcaactcacgaacccaccggagcagacac 46351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 1579268 - 1579093
Alignment:
Q  225 tcagcttcgaccaccactcaagtttcagtctg----aggagacatcacaatagcctagaagaacctgagacacaa-acttgctcccgacctcgaatcaaa 319  Q
    |||||||||||||||||||||||||| | ||     | |||||||||||| | |||||||| ||||||| ||||| ||||||||||||| | ||||||||    
T  1579268 tcagcttcgaccaccactcaagtttcggcctatcgcaagagacatcacaacaacctagaaggacctgagtcacaagacttgctcccgactttgaatcaaa 1579169  T
Q  320 agcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacct 395  Q
    || |||||||||| ||||||||  |||||| | ||| ||||||| |||||||||| ||||||| ||||| ||||||    
T  1579168 agtgatcggcccacaagactcccaacacaagtaaaagaggcatccctcaactcacgaaccaccagagcagacacct 1579093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 4489610 - 4489733
Alignment:
Q  158 tcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagtttcagtct-- 255  Q
    ||||||||||||||||||| |||| |||| ||||  | ||||  |||| |||| |||||||||||||| |||||| ||||||||||||||| ||||||      
T  4489610 tcctcaaagaaccaacaccaccaatagtgttaaattaagcactcgataatgattttgcttcaaacgtttagcttctaccaccactcaagttccagtctat 4489709  T
Q  256 --gaggagacatcacaatagccta 277  Q
      ||||||||||||||| ||||||    
T  4489710 cggaggagacatcacaaaagccta 4489733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 40531288 - 40531188
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| |||||||| ||||||||||||| ||||||||||| |||||  ||||||||||||||| |||| | |||||||||  | ||||| ||||| ||||    
T  40531288 aaactagctcccgatctcgaatcaaaagtgatcggcccatcagact--tgacacaaatcaaaacggcacccctcaactcaagacccaccagagcagacac 40531191  T
Q  394 ctt 396  Q
    |||    
T  40531190 ctt 40531188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 294 - 396
Target Start/End: Original strand, 544375 - 544477
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| ||| |||| |||||||| |||| ||||| ||||  ||||||| |||||||||||||| ||||||  ||||||||||| ||||| ||||| ||||    
T  544375 aaactagcttccgatctcgaatctaaagtgatcgacccaccagactcccgacacaaatcaaaacggcatccgtcaactcacaatccaccagagcagacac 544474  T
Q  394 ctt 396  Q
    |||    
T  544475 ctt 544477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 22915984 - 22915941
Alignment:
Q  202 gatagtgatgttgcttcaaacgttcagcttcgaccaccactcaa 245  Q
    ||||||||  |||||||||||||||||||||||| |||||||||    
T  22915984 gatagtgaatttgcttcaaacgttcagcttcgactaccactcaa 22915941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 2e-61; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 150 - 395
Target Start/End: Original strand, 17324034 - 17324283
Alignment:
Q  150 acaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagttt 249  Q
    |||||| |||||||||||||||||||||||||||||||| ||   | |||||||||||||| |||||||||||||||||||||||||||||||| ||||     
T  17324034 acaacaactcctcaaagaaccaacaccgccaacagtgatcaattcgacacctgatagtgattttgcttcaaacgttcagcttcgaccaccactctagttc 17324133  T
Q  250 cagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgac 345  Q
    |||| |    ||||||||||||||||||| || ||| |||| || || |||||||||||||||||||||||||||| |||||||||| |||||||  |||    
T  17324134 cagtatatcggaggagacatcacaatagcttaaaaggacctaagtcagaaacttgctcccgacctcgaatcaaaagagatcggcccacaagactcacgac 17324233  T
Q  346 acaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacct 395  Q
    | || | ||||||||| | |||||||||| ||||||||||| | ||||||    
T  17324234 ataagtaaaaaaggcacccctcaactcacgaaccaccggagtagacacct 17324283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 16285272 - 16285020
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||  ||||||| ||||||||| |||||||||| ||||||||| |||||||||||||||    
T  16285272 taacaacagttccttaaagaaccaacaccgccaacagtgattaattaggcacccgatagtgattttgcttcaaatgttcagctttgaccaccactcaagt 16285173  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | | || |    |||||| | |||||| |||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  16285172 tccggtttatcggaggagccgtcacaacagcctaaaaggacctgagtcgcaaacttgctcccgacctcgaatcaaaagcgatcggcccacaagactccag 16285073  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    |||| | ||||||||||| | |||||||||| ||||||  ||||| |||||||    
T  16285072 acactagtcaaaaaggcacccctcaactcacgaaccacaagagcagacacctt 16285020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 148 - 394
Target Start/End: Complemental strand, 45181800 - 45181550
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||  |||||| |||||||||| ||| |||| | ||| |||||||||||||||| ||||    
T  45181800 taacaacagctcctcaaagaaccaacaccgccaacggtgatcaattaggcacttgatagtgatattgattcagatgtttagcttcgaccaccacttaagt 45181701  T
Q  248 ttcagtctg----aggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | | ||||     |||||||||||||| |||||| ||| ||||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||| |    
T  45181700 tccggtctatcgaaggagacatcacaacagcctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagcgattggcccacaagactcccg 45181601  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacc 394  Q
    ||| || ||||||||||| | |||||||||| ||||||| ||||| |||||    
T  45181600 acaaaagtcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 45181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 23087717 - 23087617
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||||||| ||||||||||| ||||||||||| |||| ||  ||||| | ||||||||| || ||||||||||||||||||||| | |||||||||    
T  23087717 taacaacagctcatcaaagaaccatcaccgccaacaatgatcaattaggcatccgatagtgattttacttcaaacgttcagcttcgactatcactcaagt 23087618  T
Q  248 t 248  Q
    |    
T  23087617 t 23087617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 396
Target Start/End: Original strand, 2782094 - 2782196
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| |||||||| ||  ||||||||| ||||| ||||  ||||||  |||||||||||  |||||| | |||||||||||||||||| ||||| ||||    
T  2782094 aaactggctcccgatctaaaatcaaaagtgatcgtcccaccagactctcgacacaaatcattaaggcacccctcaactcacaaaccaccagagcagacac 2782193  T
Q  394 ctt 396  Q
    |||    
T  2782194 ctt 2782196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 3968575 - 3968675
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| ||||| || |||||| |||||||||| || |||  ||||||| |||||||||||  |||||| | |||||||||| ||||||| ||||| ||||    
T  3968575 aaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 3968674  T
Q  394 c 394  Q
    |    
T  3968675 c 3968675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 4000230 - 4000130
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| ||||| || |||||| |||||||||| || |||  ||||||| |||||||||||  |||||| | |||||||||| ||||||| ||||| ||||    
T  4000230 aaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 4000131  T
Q  394 c 394  Q
    |    
T  4000130 c 4000130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 18983309 - 18983225
Alignment:
Q  304 ccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagca 388  Q
    |||| ||||||||| ||  |||||| |||| ||||||  |||||| ||||| |||||| |||||||||||||| ||||| |||||    
T  18983309 ccgatctcgaatcataattgatcggtccatcagactctcgacacagatcaataaggcaccactcaactcacaacccaccagagca 18983225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 30127311 - 30127258
Alignment:
Q  301 ctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaa 354  Q
    ||||||| ||||||||||||||||||||| ||  ||||||| || |||||||||    
T  30127311 ctcccgatctcgaatcaaaagcgatcggctcaccagactcccgaaacaaatcaa 30127258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 152 - 395
Target Start/End: Original strand, 37128802 - 37129049
Alignment:
Q  152 aacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagtttca 251  Q
    |||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||| |||| ||||| |||||||||||||||||| |||||||||     
T  37128802 aacagctcctcaaagaaccaacaccgccaacaatgatgaattaggcacccgatagtgattttgcatcaaatgttcagcttcgaccaccattcaagtttcg 37128901  T
Q  252 gtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacac 347  Q
    ||||    ||||||||||||||| | |||  ||| || |||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  37128902 gtctatcggaggagacatcacaacatcctgaaaggacttgagtcacaaacttgttccggacctcgaatcaaaagcgatcggcccacaagactcctaacac 37129001  T
Q  348 aaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacct 395  Q
    || ||||||||||| |  ||||||||| ||||||| ||||| ||||||    
T  37129002 aagtcaaaaaggcacctatcaactcacgaaccaccagagcagacacct 37129049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 41958438 - 41958187
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| || ||||||||||||||| ||||||||||||| ||  |||| || ||||||||| ||| |||||| |||||||||||||||||||||||||    
T  41958438 taacaacaacttctcaaagaaccaacatcgccaacagtgatgaattaggcgcccgatagtgattttgtttcaaatgttcagcttcgaccaccactcaagt 41958339  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    ||| ||||    |||||||| | |||| || ||| ||| ||||||| |||||||||||| |||||||||||||||||| | |||| ||| ||||||||||    
T  41958338 ttcggtctatcagaggagacgttacaacagactaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagtggtcgg-ccacaagactcctg 41958240  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    |||||| ||||||||||| |  ||||||||||||||||| ||||| |||||||    
T  41958239 acacaagtcaaaaaggcacccttcaactcacaaaccaccagagcagacacctt 41958187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 212 - 382
Target Start/End: Original strand, 4397369 - 4397543
Alignment:
Q  212 ttgcttcaaacgttcagcttcgaccaccactcaagtttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccga 307  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||    ||||||||||||||| | |||| ||| ||||||| |||||||||||||||||    
T  4397369 ttgcttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaacaacctaaaaggacctgagtcacaaacttgctcccga 4397468  T
Q  308 cctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccacc 382  Q
    ||||||||||||||||||| ||||| |||||||| || | || |||||| |||| | |||||||||| |||||||    
T  4397469 cctcgaatcaaaagcgatcagcccacaagactcccgagagaagtcaaaatggcacccctcaactcacgaaccacc 4397543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 210 - 396
Target Start/End: Original strand, 42048152 - 42048343
Alignment:
Q  210 tgttgcttcaaacgttcagcttcgaccaccactcaagtttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaa-cttgctcc 304  Q
    |||||||||||| |||||  |||||| |||||| || |||||||||    |||||||||||   |||||||| ||| || |||| || ||| || |||||    
T  42048152 tgttgcttcaaatgttcatattcgacaaccacttaactttcagtctatcggaggagacatccatatagcctaaaaggacttgagtcaaaaaactggctcc 42048251  T
Q  305 cgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    ||  ||||||||||||| |||| ||||||  |||||| |||| ||||||| |||||| | |||||||||| ||||||| ||||| |||||||    
T  42048252 cggtctcgaatcaaaagtgatcagcccatcggactcccgacagaaatcaacaaggcacctctcaactcacgaaccaccagagcagacacctt 42048343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 4162051 - 4162145
Alignment:
Q  300 gctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacct 395  Q
    |||||||| ||||||||||||| ||||||||||  |||||||  ||||||||| |  ||||| | |||||||| | ||||||| ||||| ||||||    
T  4162051 gctcccgatctcgaatcaaaagtgatcggcccaccagactcccaacacaaatc-actaggcacccctcaactctcgaaccaccagagcatacacct 4162145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 23665439 - 23665509
Alignment:
Q  304 ccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcac 374  Q
    |||| ||||||||||||| ||||||||||  ||||||| || |||||| |||| |||| | ||||||||||    
T  23665439 ccgatctcgaatcaaaagtgatcggcccactagactcccgatacaaataaaaatggcacccctcaactcac 23665509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 1e-59; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 148 - 382
Target Start/End: Complemental strand, 39369067 - 39368830
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| || |||||  ||||||||||||||||||||||||||||||||| ||    
T  39369067 taacaacagctcctccaagaaccaacatcgccaacagtgataaataaggcacccga-agtgacattgcttcaaacgttcagcttcgaccaccactcacgt 39368969  T
Q  248 ttcagtc----tgaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
      | |||    |||||||||| ||||| | |||| ||||||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||| |    
T  39368968 cccggtcgcactgaggagacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccgacctcgaatcaaaagcggtcggcccacaagactcccg 39368869  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccacc 382  Q
    |||||| |||||||| || | |||||||||| |||||||    
T  39368868 acacaagtcaaaaagacacctctcaactcacgaaccacc 39368830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 35847304 - 35847051
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| ||||||||||||||||||||||||||| | || ||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  35847304 taacaacaactcctcaaagaaccaacaccgccaacatttatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagt 35847205  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
      | ||||    ||||||||||||||  |||||| ||| ||| ||| ||||||| |||||||||||||||||||||| ||||||||||| || ||||| |    
T  35847204 cccggtctatcggaggagacatcacagcagcctaaaaggacccgagtcacaaacgtgctcccgacctcgaatcaaaatcgatcggcccacaaaactcccg 35847105  T
Q  344 acacaaatc-aaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    |||||| || ||||||||| |  ||||||||||||||||| ||||| |||||||    
T  35847104 acacaagtcaaaaaaggcacccatcaactcacaaaccaccagagcagacacctt 35847051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 148 - 395
Target Start/End: Original strand, 42742213 - 42742461
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    ||||||||||||||||||||||||||||||  |||||||| ||  | ||||||||| |||||| || |||||||||| || ||| |||||||||||||||    
T  42742213 taacaacagctcctcaaagaaccaacaccgtgaacagtgacaatta-ggcacctga-agtgattttccttcaaacgtacaactttgaccaccactcaagt 42742310  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | ||||||    ||||||||||||||| |||||| ||| || |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |    
T  42742311 tccagtctatcggaggagacatcacaacagcctaaaaggacatgagtcacaaacttgctcccgacctcgaatcaaaagcgatc-gcccacaagactcccg 42742409  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacct 395  Q
    |||||| ||||||||||| | | |||| ||| ||||||| ||||| ||||||    
T  42742410 acacaagtcaaaaaggcaccccacaacccacgaaccaccagagcagacacct 42742461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 3204488 - 3204238
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| ||||||||||||||||||||| ||| |||||| ||||||||||  |  |  ||| ||||| ||| |||||||||| |||||||||||||||    
T  3204488 taacaacaactcctcaaagaaccaacaccgtcaatagtgatcaaaaaggcactcggaaaagattttgctccaa-cgttcagctttgaccaccactcaagt 3204390  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    |  ||| |    ||||||||||||||| |||||| ||||| || || |||||||||||||||||||||||||||||| |||| || ||| |||||| |||    
T  3204389 tctagtatatcggaggagacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaaaacgattggtccacaagact-ctg 3204291  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    |||||| | ||||||||| | |||||||||| | ||||| ||||| |||||||    
T  3204290 acacaagttaaaaaggcacccctcaactcacgagccaccagagcatacacctt 3204238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 148 - 348
Target Start/End: Complemental strand, 29686032 - 29685828
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| ||||||||||||||||||||  |||||||| | ||  | |||||||||| |||  ||||||||||||||||||||| |||||||| ||| |    
T  29686032 taacaacaactcctcaaagaaccaacaccatcaacagtggtcaattaagcacctgataatgactttgcttcaaacgttcagcttccaccaccacacaaat 29685933  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | | ||||    |||||||| |||||| |||||| ||| | ||||| |||||||| ||||||||| |||||||||||| ||||| ||||| ||||||| |    
T  29685932 tccggtctatcggaggagacttcacaaaagcctaaaaggatctgagtcacaaactagctcccgacttcgaatcaaaagtgatcgacccattagactcccg 29685833  T
Q  344 acaca 348  Q
    |||||    
T  29685832 acaca 29685828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 25362479 - 25362318
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| ||||||||||||| |||||||||||||||||| ||  ||||||| ||||| ||| ||||||||||||||||||||| | ||||||||||||    
T  25362479 taacaacaactcctcaaagaactaacaccgccaacagtgatcaattaggcacccgatagagattttgcttcaaacgttcagcttcaatcaccactcaagt 25362380  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctccc 305  Q
    | | ||||      ||||||||||||| |||||| ||| ||||||| |||||||||||||||    
T  25362379 tccggtctatcaatggagacatcacaacagcctaaaaggacctgagtcacaaacttgctccc 25362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 148 - 388
Target Start/End: Complemental strand, 2707267 - 2707023
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||| ||||||||| | |||||||||| |||||||| || ||  | |||||   || |||| |||||||||||||||||||| |||||||||||||||    
T  2707267 taacaatagctcctcagataaccaacaccaccaacagtaatcaattaagcacccagtaatgattttgcttcaaacgttcagctttgaccaccactcaagt 2707168  T
Q  248 ttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctg 343  Q
    | |  |||    |||||||||   ||| |||||| ||| || |||| |||||||| |||||||||||||||||||||| ||||||  ||  ||||||| |    
T  2707167 tacgatctttcggaggagacaatgcaaaagcctaaaaggacatgagtcacaaactagctcccgacctcgaatcaaaagtgatcggttcactagactcccg 2707068  T
Q  344 acacaaatcaaaaaggcatcactcaactcacaaaccaccggagca 388  Q
    |||||| |||  || ||| | |||||||||| |||||||||||||    
T  2707067 acacaagtcattaaagcacccctcaactcacgaaccaccggagca 2707023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 17218921 - 17218822
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagt 247  Q
    |||||||| ||| |||||||||||||||||||||||||||  ||  |||||||  |||||||| |||||||||| |||||||||||||||||||||||||    
T  17218921 taacaacaactcatcaaagaaccaacaccgccaacagtgaacaattaggcacccaatagtgattttgcttcaaaagttcagcttcgaccaccactcaagt 17218822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 396
Target Start/End: Complemental strand, 18557577 - 18557491
Alignment:
Q  309 ctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||| |||| | |||||||||| | ||||| ||| | |||||||    
T  18557577 ctcgaatcaaaagtgatcggcccata-gactcccgacacaaatcaaaacggcacccctcaactcacgacccaccagagtagacacctt 18557491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 2334625 - 2334752
Alignment:
Q  155 agctcctcaaagaa-ccaacaccgccaac-agtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagtttcag 252  Q
    |||||||||||||| |||||||||||||  |||||| ||  || || | |||||||||  |||||| ||||  ||||||||||||||||||||||||| |    
T  2334625 agctcctcaaagaaaccaacaccgccaatgagtgatcaattagacatccgatagtgataatgcttccaacgcacagcttcgaccaccactcaagtttcgg 2334724  T
Q  253 t--ct-gaggagacatcacaatagccta 277  Q
    |  || ||||||||||||||| ||||||    
T  2334725 taactcgaggagacatcacaacagccta 2334752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 1223124 - 1223089
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaaca 183  Q
    |||||| |||||||||||||||||||||||||||||    
T  1223124 taacaatagctcctcaaagaaccaacaccgccaaca 1223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 31721726 - 31721688
Alignment:
Q  301 ctcccgacctcgaatcaaaagcgatcggcccataagact 339  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  31721726 ctcccgatctcgaatcaaaagcgatcggcccattagact 31721688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 152 - 396
Target Start/End: Complemental strand, 38710154 - 38709907
Alignment:
Q  152 aacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagtttca 251  Q
    ||||| ||||||||||||||||||||||||||||||| ||   ||||||  || ||||| ||||||||| ||||||||||||||||||||||||||| |     
T  38710154 aacagttcctcaaagaaccaacaccgccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttccg 38710055  T
Q  252 gtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacac 347  Q
    ||||    ||||||||||||||| | |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||    
T  38710054 gtctatcggaggagacatcacaacatcctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagccca-aagactcccgaaac 38709956  T
Q  348 aaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
    ||  |||||||||| | |||||||||| ||||||| || ||||||||||    
T  38709955 aaggcaaaaaggcacccctcaactcacgaaccaccagaacaaacacctt 38709907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 152 - 349
Target Start/End: Original strand, 4397349 - 4397550
Alignment:
Q  152 aacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaaacgttcagcttcgaccaccactcaagtttca 251  Q
    |||| ||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | |     
T  4397349 aacaactcctcaaagaaccaacaccgccaacaatgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagatccg 4397448  T
Q  252 gtct----gaggagacatcacaatagcctagaagaacctgagacacaaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacac 347  Q
    ||||    ||||||||||||||| |||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  4397449 gtctatcggaggagacatcacaacagcctaaaaggacctgagtcacaaacttactcccgaactcgaatcaaaagcgatcggcacataagactcccgacac 4397548  T
Q  348 aa 349  Q
    ||    
T  4397549 aa 4397550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 148 - 396
Target Start/End: Complemental strand, 4391814 - 4391561
Alignment:
Q  148 taacaacagctcctcaaagaaccaacaccgccaacagtgataaaaaaggcacctgatagtgatgttgcttcaa-acgttcagcttcgaccaccactcaag 246  Q
    |||||| |||||||||||||||||||||| |||||||||  |||  | |||| |||||  ||| ||||||||| | | ||| ||||||||||||||||||    
T  4391814 taacaaaagctcctcaaagaaccaacaccaccaacagtggaaaatcaagcacatgataaagattttgcttcaagatgctcaacttcgaccaccactcaag 4391715  T
Q  247 tttcagtct----gaggagacatcacaatagcctagaagaacctgagacacaaa-cttgctcccgacctcgaatcaaaagcgatcggcccataagactcc 341  Q
    || | ||||    ||||||||||||||| |||||| |||| |||||| |||||| ||||||||||||| ||||||||||||||| |||||| ||||||||    
T  4391714 ttcctgtctatcggaggagacatcacaacagcctaaaaga-cctgagtcacaaaacttgctcccgaccccgaatcaaaagcgattggcccacaagactcc 4391616  T
Q  342 tgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacctt 396  Q
     |||||||  |||||| ||| | |||||||||| ||||||| || || |||||||    
T  4391615 cgacacaaggcaaaaatgcacccctcaactcacgaaccaccagaacagacacctt 4391561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 300 - 395
Target Start/End: Complemental strand, 38564951 - 38564857
Alignment:
Q  300 gctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacacct 395  Q
    |||||||| ||||||||||||||||||||||||  |||||||| ||||||||| |||||||| | |||||||||| | ||| | ||||||||||||    
T  38564951 gctcccgatctcgaatcaaaagcgatcggcccacgagactcctaacacaaatc-aaaaggcacccctcaactcacgacccatctgagcaaacacct 38564857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 13987677 - 13987577
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| |||||||| |||||| |||||||||| ||||||  ||| ||| |||||||||||  |||||| | |||||||||| ||||||| ||||| ||||    
T  13987677 aaactagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacac 13987578  T
Q  394 c 394  Q
    |    
T  13987577 c 13987577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 7546454 - 7546554
Alignment:
Q  294 aaacttgctcccgacctcgaatcaaaagcgatcggcccataagactcctgacacaaatcaaaaaggcatcactcaactcacaaaccaccggagcaaacac 393  Q
    ||||| ||| |||| ||||||||||||| |||||| |||  ||||||   |||| ||| ||||||||| | |||||||||| ||||||| ||||| ||||    
T  7546454 aaactagcttccgatctcgaatcaaaagtgatcggtccaccagactctcaacaccaataaaaaaggcacccctcaactcacgaaccaccagagcagacac 7546553  T
Q  394 c 394  Q
    |    
T  7546554 c 7546554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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