View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17708_low_10 (Length: 245)

Name: NF17708_low_10
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17708_low_10
NF17708_low_10
[»] chr6 (4 HSPs)
chr6 (1-211)||(886372-886582)
chr6 (2-99)||(2918576-2918673)
chr6 (120-203)||(858656-858739)
chr6 (59-99)||(33051619-33051659)
[»] chr7 (3 HSPs)
chr7 (5-99)||(35858589-35858683)
chr7 (1-99)||(34790403-34790499)
chr7 (63-99)||(34590319-34590355)
[»] chr2 (4 HSPs)
chr2 (1-92)||(31412529-31412621)
chr2 (1-99)||(24401345-24401442)
chr2 (64-98)||(19983143-19983177)
chr2 (63-99)||(31079925-31079961)
[»] chr5 (2 HSPs)
chr5 (6-82)||(31941293-31941369)
chr5 (62-99)||(10940005-10940042)
[»] scaffold0057 (1 HSPs)
scaffold0057 (6-99)||(62624-62717)
[»] chr4 (3 HSPs)
chr4 (56-98)||(3653580-3653622)
chr4 (63-99)||(2870497-2870533)
chr4 (63-99)||(29134721-29134757)
[»] chr8 (2 HSPs)
chr8 (63-99)||(42884452-42884488)
chr8 (63-99)||(39192581-39192617)
[»] chr1 (1 HSPs)
chr1 (63-99)||(40901500-40901536)
[»] chr3 (2 HSPs)
chr3 (63-96)||(51295131-51295164)
chr3 (63-99)||(6786205-6786241)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 886582 - 886372
Alignment:
Q  1 tttctaaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  886582 tttctaaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatagg 886483  T
Q  101 ctatagtagtaggctataggctatgatattaagatagaagaaccggataaataattattgaaagagtatcatgtgcttaaaagtatagaaattttatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  886482 ctatagtagtaggctataggctatgatattaagatagaagaaccggataaataattattgaaagagtatcatgtgcttaaaagtatagaaattttatatt 886383  T
Q  201 aacttttcaga 211  Q
    |||||||||||    
T  886382 aacttttcaga 886372  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 2918576 - 2918673
Alignment:
Q  2 ttctaaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||    
T  2918576 ttctaaatctatttattttataattgcaatgaaatcaagtgtaagagtttcaaaacaaacaaaaaataatttttatgataataagcaaacataaatag 2918673  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 858739 - 858656
Alignment:
Q  120 gctatgatattaagatagaagaaccggataaataattattgaaagagtatcatgtgcttaaaagtatagaaattttatattaac 203  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||||| ||||||||| ||||||||||||| |||| |||||||    
T  858739 gctatgatattaacatagaagagccacataaagaattattgaaagagcatcatgtgcgtaaaagtatagaatttttgtattaac 858656  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 33051619 - 33051659
Alignment:
Q  59 aactaaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||||| |||||||||||| | |||||||||||||    
T  33051619 aactaaaaatgaattttatgatagtgaacaaacagaaatag 33051659  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 35858683 - 35858589
Alignment:
Q  5 taaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  35858683 taaatctatttattttataaatgcaatgaaatcaagtacaagagtttcaaaacaaattaaaaatgatttttatgatagtaagcaaacaaaaatag 35858589  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 34790403 - 34790499
Alignment:
Q  1 tttctaaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||| |||||||||| |||| ||||| ||| ||| ||||||||||||| |||||| |  |  |||||||||||||||| |||||| |||||||||||||    
T  34790403 tttcaaaatctattt-ttttctaaatacaaggaactcaagtgtaagagcttcaaatcttaa-aaaaatgatttttatgttagtaaacaaacagaaatag 34790499  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 34590319 - 34590355
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34590319 aaaaatgatttttatgatagtaaacaaacagaaatag 34590355  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31412529 - 31412621
Alignment:
Q  1 tttctaaatctatttattttataaatgcaatgaaatcaagtgtaagag--tttcaaaacaaactaaaaatgatttttatgatagtaagcaaaca 92  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||    
T  31412529 tttctaaatctatttattttataaatgcaatgaa-tcaagtgtaagagagtatcaaaacaaactaaaaatgatttttatgataataagcaaaca 31412621  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24401345 - 24401442
Alignment:
Q  1 tttctaaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||| |||||||||| |||| ||||   || ||| |||||||||||||||||||| |  | |||||||||||||||||||||||| |||||||||||||    
T  24401345 tttcaaaatctattttttttctaaacataaggaactcaagtgtaagagtttcaaatctta-taaaaatgatttttatgatagtaaacaaacagaaatag 24401442  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 19983177 - 19983143
Alignment:
Q  64 aaaatgatttttatgatagtaagcaaacagaaata 98  Q
    |||||||||||||||||||||| ||||||||||||    
T  19983177 aaaatgatttttatgatagtaaacaaacagaaata 19983143  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 31079925 - 31079961
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  31079925 aaaaatgatttttatgatagtaaacaaacataaatag 31079961  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 31941293 - 31941369
Alignment:
Q  6 aaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatag 82  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  31941293 aaatctatttattttacaaatgcaatgaacttaagtgtaagagtttcaaaacaaactaaaaatgattttaatgatag 31941369  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 10940005 - 10940042
Alignment:
Q  62 taaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10940005 taaaaatgatttttatgatagtaaacaaacagaaatag 10940042  T

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Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 62717 - 62624
Alignment:
Q  6 aaatctatttattttataaatgcaatgaaatcaagtgtaagagtttcaaaacaaactaaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||| |||| ||||| ||| ||| |||||||||||||||| ||| || |   ||||||||||||||||| |||| |||||||||||||    
T  62717 aaatctattttttttctaaatacaaggaattcaagtgtaagagttttaaatcataaacaaaatgatttttatgatggtaaacaaacagaaatag 62624  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 3653622 - 3653580
Alignment:
Q  56 acaaactaaaaatgatttttatgatagtaagcaaacagaaata 98  Q
    |||||||||||||||||||||||||||| | ||||||||||||    
T  3653622 acaaactaaaaatgatttttatgatagtgaacaaacagaaata 3653580  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 2870497 - 2870533
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||| |||||||||||| |||||||||||||    
T  2870497 aaaaatgattcttatgatagtaaacaaacagaaatag 2870533  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 29134721 - 29134757
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  29134721 aaaaatgatttttatgatagtaaacaaaaagaaatag 29134757  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 42884452 - 42884488
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||||||||||||||||||||||| ||||||    
T  42884452 aaaaatgatttttatgatagtaagcaaacaaaaatag 42884488  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 39192581 - 39192617
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||| |||||||||||||||||| |||||||||||||    
T  39192581 aaaattgatttttatgatagtaaacaaacagaaatag 39192617  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 40901500 - 40901536
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    |||||||||||||||||||||||||||||| ||||||    
T  40901500 aaaaatgatttttatgatagtaagcaaacataaatag 40901536  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 51295131 - 51295164
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaa 96  Q
    ||||||||||||||||||||||| ||||||||||    
T  51295131 aaaaatgatttttatgatagtaaacaaacagaaa 51295164  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 6786205 - 6786241
Alignment:
Q  63 aaaaatgatttttatgatagtaagcaaacagaaatag 99  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  6786205 aaaaatgatttttatgatagtaaacaaacaaaaatag 6786241  T

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