View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17708_low_3 (Length: 537)
Name: NF17708_low_3
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17708_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 4555419 - 4555943
Alignment:
| Q |
1 |
taatcagaacgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctacaaaatgttggatcatgatttgacattattt |
100 |
Q |
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| T |
4555419 |
taatcagaatgttgattcctttgtactgctaacaaatcactctgtaagtttctatgcatgctacagctaaaaaatgttggatcatgatttgacattattt |
4555518 |
T |
|
| Q |
101 |
ctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaattgaattcaaaatctatactcgaaatgagtc |
200 |
Q |
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| T |
4555519 |
ctcaaacacaattttttattatacattatgctaattaaatcagacgatttatattctgactttagaaaattgaattcaaaatttatactcggaatgagtc |
4555618 |
T |
|
| Q |
201 |
gtctgatttttatctaattaacaataatgtcgatttcatgactgcagtgactttgtgaccgcagaaaacgcagatttaaaatgaataaattaaaaattgc |
300 |
Q |
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| T |
4555619 |
gtctgatctttatctaattaacaataatgtcgatttcatgactgcagtgactttgtgaccgcagaaaacgcagacttaaaatgaataaattaaaaattgc |
4555718 |
T |
|
| Q |
301 |
tagtaacttgcttgctttacaaactttatgagcgttataaaaccaacttcagcgttatttcttgtagttgaagctacaaactcttctactttgctgattt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4555719 |
tagtaacttgcttgctttacaaactttatgagcgttacaaaaccaacttcagcgttatttcttgtagttgaagctacaaattcttctactttgctgattt |
4555818 |
T |
|
| Q |
401 |
gatatttatgtgaaccagaaggcaatgttgttcgcaactgcattccgctttgtgggaggtaaaggagacattcaagtgtgctatccatttgttgaaaagg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4555819 |
gatatttatgtgaaccagaaggcaatgttgttcgcaactgcattccgctttgtgggaggtaaaggagacattcaagtgtgctatccatttgttgaaaagg |
4555918 |
T |
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| Q |
501 |
atgatgaatacagcactgcacaggt |
525 |
Q |
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| T |
4555919 |
atgatgaatacagcactgcacaggt |
4555943 |
T |
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