View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17708_low_4 (Length: 534)
Name: NF17708_low_4
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17708_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12810724 - 12810951
Alignment:
| Q |
1 |
aagaaacttaatcacaaataattactgattgttgtacagtaagaaaaa--gaatattttgtcattcctcaaattgacctaaaagccaaagagtggttcca |
98 |
Q |
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| T |
12810724 |
aagaaacttaatcacaaataattactgatagttgtacagtaaaaaaaaaagaagattttgtcattcctcaaaatgacctaaaagccaaagagtgattcca |
12810823 |
T |
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| Q |
99 |
aattctaaaccctgctccaccttgtaataaagctggacataaagatggaagatattacttattacagtannnnnnnagtggagagatacagtgatagaac |
198 |
Q |
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| T |
12810824 |
aattttaaaccctgctccaccttgtaataaagctggacataaagatggaagatattacttattacagtatttttttagtggagagatacagtgatagagc |
12810923 |
T |
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| Q |
199 |
caaaagattaaacgtttaaaagggatat |
226 |
Q |
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| T |
12810924 |
caaaagattaaacgtttaaaagggatat |
12810951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 260 - 434
Target Start/End: Original strand, 12810976 - 12811150
Alignment:
| Q |
260 |
gtgagaattaatagtttaaagcttttttaaccttcaattatttaaaacatgattttggaaaaaaccctagatcttacacaacagtacataagagtgaaca |
359 |
Q |
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| T |
12810976 |
gtgagaattaaaagtttaaagcttttttaaccttcaattatttaaaacatgattttggaataaaccctagatcttacacaacagtacataagagtgaaca |
12811075 |
T |
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| Q |
360 |
cacacaaacacataattatatcttattttatataaaattgcatagtctagtacgactaatattgtcatatgattg |
434 |
Q |
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| T |
12811076 |
cacacaaacacataattatatcttattttatataaaattgcatagtctagtacgactaatattgtcatatgattg |
12811150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 518
Target Start/End: Original strand, 12811181 - 12811233
Alignment:
| Q |
465 |
gactctcttctgagaaacaagaaatagctagggttgtactgttccattatttca |
518 |
Q |
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| T |
12811181 |
gactctcttctgagaaacaagaaatagcta-ggttgtactgttccattttttca |
12811233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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