View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17708_low_5 (Length: 460)

Name: NF17708_low_5
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17708_low_5
NF17708_low_5
[»] chr7 (4 HSPs)
chr7 (11-446)||(38809617-38810049)
chr7 (27-437)||(38822575-38822967)
chr7 (11-147)||(38811998-38812134)
chr7 (174-441)||(38811689-38811959)
[»] chr1 (5 HSPs)
chr1 (236-394)||(30736413-30736571)
chr1 (243-337)||(32986341-32986435)
chr1 (294-394)||(39360347-39360444)
chr1 (278-337)||(30641793-30641852)
chr1 (366-412)||(40444680-40444726)
[»] chr8 (2 HSPs)
chr8 (232-310)||(35547999-35548077)
chr8 (290-322)||(8111468-8111500)
[»] chr5 (1 HSPs)
chr5 (25-129)||(34146213-34146317)
[»] chr2 (2 HSPs)
chr2 (264-391)||(4417861-4417988)
chr2 (360-415)||(4420224-4420279)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 38810049 - 38809617
Alignment:
Q  11 atcactcatgcttaaatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38810049 atcactcatgcttaaatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatac 38809950  T
Q  111 tcaaactctataacttgttcaccaagttccgatttaacctttgaannnnnnnnnnnnnnnnnggttgaattggaggaagaagacggcttagaagggttac 210  Q
    ||||||||||||||||||||| |||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||     
T  38809949 tcaaactctataacttgttcaacaagttccgatttaacctttgaagatgatgatgatga---ggttgaattggaggaagaagacggcttagaagggttat 38809853  T
Q  211 ataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38809852 ataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttc 38809753  T
Q  311 ctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatggccttatccttactcct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38809752 ctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatggccttatccttactcct 38809653  T
Q  411 ctatacttgattttctttggtaattcatcttgtttc 446  Q
    |||||||| |||||||||||||||||||||||||||    
T  38809652 ctatactttattttctttggtaattcatcttgtttc 38809617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 27 - 437
Target Start/End: Complemental strand, 38822967 - 38822575
Alignment:
Q  27 tcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatactcaaactctataactt 126  Q
    ||||||||||||||||||||| |||  |  |||||| |  |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38822967 tcaagtaactcctacttgaaccagttgttattgatggtattctcaggatccaagagttcctctaataatttttcatccaaatactcaaactctataattt 38822868  T
Q  127 gttcaccaagttccgatttaacctttgaannnnnnnnnnnnnnnnnggttgaattggaggaagaagacggcttagaagggttacataccacactgcaagg 226  Q
    |||||||||| |||||||||||| |||||                 |||||||||||| |||||||| || |||||||         ||||| |||  ||    
T  38822867 gttcaccaagctccgatttaaccgttgaagatgatgatga------ggttgaattggatgaagaagagggattagaag---------ccacattgcttgg 38822783  T
Q  227 aaaataatgttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaat 326  Q
    |||||   |||| |||||||| || |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38822782 aaaat---gttcttgaggaaaattgagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaat 38822686  T
Q  327 gtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatggccttatccttactcctctatacttgattttct 426  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||| ||    
T  38822685 gtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcctctatacttaatttgct 38822586  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 38812134 - 38811998
Alignment:
Q  11 atcactcatgcttaaatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatac 110  Q
    ||||||||||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||    
T  38812134 atcactcatgcttaaatcaagtaactcctccttgaacaagttttggttgaggatgctctcaaaatccaagagttcctctaacaatgtttcatcccaatac 38812035  T
Q  111 tcaaactctataacttgttcaccaagttccgatttaa 147  Q
    ||||| |||| ||||||||||||||| || |||||||    
T  38812034 tcaaaatctagaacttgttcaccaagctctgatttaa 38811998  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 174 - 441
Target Start/End: Complemental strand, 38811959 - 38811689
Alignment:
Q  174 gttgaattggaggaagaagacggcttagaagggttacataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctca 273  Q
    ||||||||||| |||||||| | ||||||||  ||| | |||||| ||||||||||||   ||||||| |||||||| ||||| ||  ||||||||||||    
T  38811959 gttgaattggatgaagaagatgacttagaagaattataaaccacattgcaaggaaaat---gttcatgtggaaagttgagaatggccaaagaacctctca 38811863  T
Q  274 tttcaaaagcagcacgatcataagc-----tcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcga 368  Q
    |||||||||||||| ||||||||||     | |||||||||||| |  ||| |||||||||||||||||||||||||| ||||| ||||||||||||| |    
T  38811862 tttcaaaagcagcatgatcataagcccttgttttgcagcttccttactagtattaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcta 38811763  T
Q  369 atc-tctgctgcacattttccccatggccttatccttactcctctatacttgattttctttggtaattcatctt 441  Q
    ||| |  |  | | |||||  ||||||||  |||||| |||||||||||||||||| | ||| |||||| ||||    
T  38811762 atcttaggggggaaattttggccatggccggatcctttctcctctatacttgatttgcattgttaattcctctt 38811689  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 394
Target Start/End: Original strand, 30736413 - 30736571
Alignment:
Q  236 ttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagc 335  Q
    |||||| |||||||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||  |||||| || |||    
T  30736413 ttcatgtggaaagttgagaattgctaaagcacctctcatctcaaaagcagcacgatcataagctcttgcagcttcctccgcggtgagaaatgtgcctagc 30736512  T
Q  336 caaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatgg 394  Q
    || || || || ||  ||||||| |  || |||||||| || ||| | |||||||||||    
T  30736513 cacacgcgtgcaccgcgtctagctgggtcccgaatctcagccgcaaactttccccatgg 30736571  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 32986435 - 32986341
Alignment:
Q  243 ggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagcca 337  Q
    ||||| |||||||| ||  | ||||||||||| | ||||||||| | ||||||||||||||||||||| ||||||||||| || || ||||||||    
T  32986435 ggaaaattaagaattgcaaatgaacctctcatattaaaagcagctctatcataagctcttgcagcttcttcagcagtgttgaaagtgccaagcca 32986341  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 39360444 - 39360347
Alignment:
Q  294 taagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatg 393  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||| ||| |||| | |||    | ||| ||||||||||| || |||||||||||||    
T  39360444 taagctctagcagcttcttcagcagtgttgaatgtaccaagccaaacacgaactccttttct---tggatcacgaatctctgcagcccattttccccatg 39360348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 30641852 - 30641793
Alignment:
Q  278 aaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagcca 337  Q
    ||||||||||  ||||||||||||||||||||  |||||||| | |||||| ||||||||    
T  30641852 aaaagcagcagcatcataagctcttgcagcttgttcagcagtatcaaatgttccaagcca 30641793  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 40444680 - 40444726
Alignment:
Q  366 cgaatctctgctgcacattttccccatggccttatccttactcctct 412  Q
    ||||| ||||| ||| ||||||||||||||||| |||||||||||||    
T  40444680 cgaatttctgcagcatattttccccatggccttctccttactcctct 40444726  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 35548077 - 35547999
Alignment:
Q  232 aatgttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagcttc 310  Q
    |||||||||| |||||  | |||||||||||||||||||| || || ||||||||||  ||||||||||||||||||||    
T  35548077 aatgttcatgtggaaaaattagaatagctgaagaacctctaatatcgaaagcagcacagtcataagctcttgcagcttc 35547999  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 8111468 - 8111500
Alignment:
Q  290 atcataagctcttgcagcttcctcagcagtgtt 322  Q
    ||||||||||||||||||||| |||||||||||    
T  8111468 atcataagctcttgcagcttcttcagcagtgtt 8111500  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 34146317 - 34146213
Alignment:
Q  25 aatcaagtaactcctacttgaacaagtcctggttgatgatgctctcaaaatccaagagttcctctaataatttttcatccaaatactcaaactctataac 124  Q
    |||||||| |||||||||||| |||||||||||||||||  || |  ||||||||  | ||| |||| ||||| ||||  |||||||| |||||||||||    
T  34146317 aatcaagtgactcctacttgatcaagtcctggttgatgagactatggaaatccaattggtccactaacaatttgtcattgaaatactcgaactctataac 34146218  T
Q  125 ttgtt 129  Q
     ||||    
T  34146217 ctgtt 34146213  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 391
Target Start/End: Complemental strand, 4417988 - 4417861
Alignment:
Q  264 gaacctctcatttcaaaagcagcacgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaat 363  Q
    |||||||||||||  |||||||| | |||||||||  | |||||||| ||||| || |  ||||| |||||||| |||| ||||||||| | |||||| |    
T  4417988 gaacctctcattttgaaagcagctctatcataagccatagcagcttcttcagctgtttggaatgttccaagccatactctagctccatgacgagccgagt 4417889  T
Q  364 ctcgaatctctgctgcacattttcccca 391  Q
    | |||||||| || ||| |||| |||||    
T  4417888 cacgaatctccgccgcatatttccccca 4417861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 4420224 - 4420279
Alignment:
Q  360 gaatctcgaatctctgctgcacattttccccatggccttatccttactcctctata 415  Q
    ||||||| ||| || |||||| ||||||||||||||||| ||||||||||||||||    
T  4420224 gaatctctaatttcagctgcatattttccccatggccttctccttactcctctata 4420279  T

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