View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17708_low_8 (Length: 382)
Name: NF17708_low_8
Description: NF17708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17708_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 3557192 - 3557555
Alignment:
| Q |
1 |
tgaggtttttattaggattagtttggatgtgaacatctatagtatgattttctttaaaatcataaaaattagactattttcattttgtgtgtgtttcact |
100 |
Q |
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| T |
3557192 |
tgaggtttttattaggattagtttggatgtgaacatctatagtatgattttctttaaaatcataaaaattagactattttcattttgtgtgtgtttcact |
3557291 |
T |
|
| Q |
101 |
atggttacttgctatgtttttattgtgaataataataatggttgttaaatgaaggatggagaaggtaaaattaagatggaaaagcagtcaagcaaaaatc |
200 |
Q |
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| T |
3557292 |
atggttacttgctatgtttttattgtgaacaata---atggttgttaaatgaaggatggagaaggtaaaattaagatggaaaagcagtcaagcaaaaatc |
3557388 |
T |
|
| Q |
201 |
ttgggttctacggtatcaatattaggtgcactcctagttgttctttataagggtccaataatcataccctcactatcaacacaatcaccacctattattc |
300 |
Q |
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| T |
3557389 |
ttgggttctacggtatcaatattaggtgcactcctagttgttctttataagggtccaataatcataccctcaccatcaacacaatcaccacctattattc |
3557488 |
T |
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| Q |
301 |
attctccaatca---cttcaacaacagaatcaaattggattcttggtggatctctactttgttattga |
365 |
Q |
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| T |
3557489 |
attctccaatcacttcttcaacaacagaatcaaattggattcttggtggatctctac-ttgttattga |
3557555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 134 - 365
Target Start/End: Complemental strand, 3124561 - 3124328
Alignment:
| Q |
134 |
aataatggttgttaaatgaaggatggagaaggtaaaattaagatggaaaagcagtcaagcaaaaatcttgggttctacggtatcaatattaggtgcactc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
3124561 |
aataatggttgttaaatgaaggatggagaaggtaaaattaaggtggaaaagcagtcaagcaaaaatcctgggttctacggtatcaatattaggtgctctc |
3124462 |
T |
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| Q |
234 |
ctagttgttctttataagggtccaataatcataccctcactatcaacacaatcaccacctattattcattctccaatca---cttcaacaacagaatcaa |
330 |
Q |
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| T |
3124461 |
acagttgttctttataagggtccaataatcataccctcaccatcaacacaatcaccacctattattcattctccaatcacttcttcaacaacagaatcaa |
3124362 |
T |
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| Q |
331 |
attggattcttggtggatctctactttgttattga |
365 |
Q |
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| T |
3124361 |
attggattcttggtggatctctac-ttgttattga |
3124328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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