View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17709_high_13 (Length: 259)

Name: NF17709_high_13
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17709_high_13
NF17709_high_13
[»] chr8 (12 HSPs)
chr8 (1-242)||(36873883-36874131)
chr8 (116-233)||(42652655-42652772)
chr8 (116-201)||(44061811-44061896)
chr8 (116-230)||(15716868-15716984)
chr8 (116-233)||(33451457-33451574)
chr8 (116-231)||(1068668-1068785)
chr8 (116-231)||(12241134-12241251)
chr8 (116-231)||(34435629-34435746)
chr8 (116-231)||(44090948-44091065)
chr8 (116-201)||(9630217-9630302)
chr8 (116-197)||(26026994-26027075)
chr8 (120-233)||(4672051-4672166)
[»] chr3 (8 HSPs)
chr3 (116-233)||(27168574-27168693)
chr3 (116-233)||(38671677-38671796)
chr3 (116-207)||(33472311-33472402)
chr3 (116-233)||(34307433-34307552)
chr3 (116-221)||(29525936-29526042)
chr3 (119-215)||(9862613-9862709)
chr3 (116-231)||(32362995-32363110)
chr3 (116-230)||(31104727-31104843)
[»] chr2 (7 HSPs)
chr2 (116-233)||(26480982-26481101)
chr2 (116-233)||(30831814-30831933)
chr2 (139-233)||(37003670-37003766)
chr2 (116-231)||(11965855-11965972)
chr2 (116-213)||(14871953-14872050)
chr2 (116-209)||(14877075-14877168)
chr2 (116-231)||(37731092-37731209)
[»] chr1 (4 HSPs)
chr1 (116-233)||(4213132-4213251)
chr1 (116-233)||(7918954-7919073)
chr1 (118-237)||(4857966-4858087)
chr1 (187-231)||(27742679-27742723)
[»] chr4 (12 HSPs)
chr4 (116-232)||(55266086-55266204)
chr4 (116-191)||(21014101-21014176)
chr4 (116-230)||(50050700-50050815)
chr4 (116-233)||(39158165-39158284)
chr4 (116-233)||(2004081-2004200)
chr4 (116-233)||(41262237-41262356)
chr4 (176-231)||(48494867-48494922)
chr4 (116-218)||(13196833-13196937)
chr4 (116-201)||(38519887-38519972)
chr4 (116-201)||(51255840-51255925)
chr4 (119-233)||(52204910-52205026)
chr4 (120-233)||(5386432-5386547)
[»] scaffold0432 (1 HSPs)
scaffold0432 (120-233)||(6416-6531)
[»] chr6 (4 HSPs)
chr6 (119-232)||(11635430-11635545)
chr6 (116-215)||(17182178-17182277)
chr6 (116-206)||(1287002-1287092)
chr6 (116-231)||(18064982-18065099)
[»] chr5 (4 HSPs)
chr5 (116-230)||(16971992-16972108)
chr5 (116-233)||(11954491-11954610)
chr5 (116-233)||(42446183-42446302)
chr5 (120-215)||(35075474-35075569)
[»] chr7 (7 HSPs)
chr7 (117-233)||(43807706-43807824)
chr7 (116-233)||(46880962-46881081)
chr7 (116-201)||(12007078-12007163)
chr7 (116-201)||(29723817-29723902)
chr7 (116-233)||(32777599-32777718)
chr7 (116-201)||(27570437-27570522)
chr7 (116-201)||(28249462-28249547)
[»] scaffold0201 (1 HSPs)
scaffold0201 (116-233)||(8532-8651)
[»] scaffold0110 (1 HSPs)
scaffold0110 (120-231)||(28223-28336)
[»] scaffold0618 (1 HSPs)
scaffold0618 (116-231)||(8845-8962)
[»] scaffold0184 (1 HSPs)
scaffold0184 (116-221)||(13449-13556)
[»] scaffold0078 (1 HSPs)
scaffold0078 (116-221)||(59288-59395)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36873883 - 36874131
Alignment:
Q  1 atttgttttcatgccaacttagtttttataatgcaaatgtta-------agtttggctcatgaatttaaggactgcattaaacnnnnnnncaacacacct 93  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||       ||| ||||||    
T  36873883 atttgttttcatgccaacttagtttttataatgcaaatgttactatgttagtttggctcatgaatttaaggactgcattaaacaaaaaa-caatacacct 36873981  T
Q  94 tagtacactttttatgaataaca-tgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtaca 192  Q
    ||||||||||||||| |||| || ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  36873982 tagtacactttttataaatagcaatgttatttgaacaaccctttattgtgataattttttatacaaccaaattatataaagggatttagatagtggtaca 36874081  T
Q  193 aaaatcaaaataatatagagaaagtagaagaacaatgtgagcatgttaaa 242  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  36874082 aaaatcaaaataatagagagaaaatagaagaacaatgtgaacatgttaaa 36874131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 42652772 - 42652655
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagagaaa 215  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||| ||||||| || ||||| ||| ||||| ||||||     
T  42652772 atgttatttgaacaactctttattgtgacaactttttatacaactaaattatataaatggatttagatagtggcacgaaaattaaagtaatagagagaat 42652673  T
Q  216 gtagaagaacaatgtgag 233  Q
    ||||||||||||||||||    
T  42652672 gtagaagaacaatgtgag 42652655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 44061896 - 44061811
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    ||||||||||||||||| ||| ||||||||| || ||  |||||||||||||| ||||  ||||| ||||||  ||||||||||||    
T  44061896 atgttatttgaacaactatttcttgtgataatttgttggacaaccaaattatacaaagaaatttagatagtgacacaaaaatcaaa 44061811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 15716868 - 15716984
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||| |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  ||||| |||||| ||||||  |||  | |||||    
T  15716868 atgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtgatacaaatatcaaagcaatagagagaga 15716967  T
Q  214 aagtagaagaacaatgt 230  Q
    |||||||||||||||||    
T  15716968 aagtagaagaacaatgt 15716984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 33451457 - 33451574
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||| |||| |||||| ||||| ||| |||| ||||||||| ||| | | |||  |||||| ||||||||||||  |||  | |||||    
T  33451457 atgttatttgaacaaccctttcttgtgacaacttgttagacaatcaaattatacaaa-gaaattaggtagtggcacaaaaatcaaagcaatagagagaga 33451555  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||| ||||||||||    
T  33451556 aagtagaag-acaatgtgag 33451574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 1068785 - 1068668
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga-- 213  Q
    ||||||||||||||||  |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  ||||| |||||| ||||||  |||| |||||      
T  1068785 atgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtgttacaaatatcaaagcaatagagagaga 1068686  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  1068685 aagtagaagaacaatgtg 1068668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 12241251 - 12241134
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagag--a 213  Q
    ||||||||||||||||| |||  |||||||| || ||  ||||||| |||||| ||||  ||||| ||||||  | ||||||||||  |||| ||||  |    
T  12241251 atgttatttgaacaacttttttatgtgataatttgttggacaaccacattatacaaagaaatttagatagtgacataaaaatcaaagcaatagagagata 12241152  T
Q  214 aagtagaagaacaatgtg 231  Q
    | ||||||||||||||||    
T  12241151 atgtagaagaacaatgtg 12241134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 34435629 - 34435746
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatataga--ga 213  Q
    ||||||||||||||||  |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  |||||| ||||| ||||||  |||| |||  ||    
T  34435629 atgttatttgaacaacctttttatgtgacaacttgttgcacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaatagagagcga 34435728  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  34435729 aagtagaagaacaatgtg 34435746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 44091065 - 44090948
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga-- 213  Q
    ||||||||||||||||  |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  |||||  ||||||||||||  |||| |||||      
T  44091065 atgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagcaatagagagaga 44090966  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  44090965 aagtagaagaacaatgtg 44090948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 9630302 - 9630217
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    ||||||||| ||||||| ||| |||||| || || ||| ||||| |||||||||||||  |||||  ||||| || ||||||||||    
T  9630302 atgttatttaaacaactattttttgtgacaatttgttagacaactaaattatataaagaaatttaggtagtgatataaaaatcaaa 9630217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 26027075 - 26026994
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaat 197  Q
    |||||||||||||| || ||| |||||| ||||| ||   ||||||||||||| ||||  ||||| |||||| |||||||||    
T  26027075 atgttatttgaacagctatttcttgtgacaacttgttggccaaccaaattatacaaagaaatttagatagtgatacaaaaat 26026994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 4672166 - 4672051
Alignment:
Q  120 tatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaagt 217  Q
    ||||||||||||| ||| |||||| | | | ||| |||||||||| ||| ||||  |||||    |||||||||||||||||| | |  | |||||||||    
T  4672166 tatttgaacaactttttcttgtgacaccctattagacaaccaaataatacaaagaaatttaggcggtggtacaaaaatcaaaacattggagagagaaagt 4672067  T
Q  218 agaagaacaatgtgag 233  Q
    ||||| ||||||||||    
T  4672066 agaaggacaatgtgag 4672051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 27168574 - 27168693
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga-- 213  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||      
T  27168574 atgttatttgaacaaccctttattatgacaacttcttatacaaccaaattatacaaagggatttaaatagtggcacaaaaatcaaagtaatagagagagg 27168673  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||||| ||| ||||    
T  27168674 aagtagaagaataatatgag 27168693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 38671796 - 38671677
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatag--aga 213  Q
    ||||||||||||||||  |||||||| |||||||| |||||||  ||||||||||||| |||||| |||||| ||||||||| ||| ||||| ||  | |    
T  38671796 atgttatttgaacaaccatttattgtaataacttcctatacaattaaattatataaagtgatttagatagtgatacaaaaattaaagtaatagagaaata 38671697  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||| ||||||||||||||    
T  38671696 aagtataagaacaatgtgag 38671677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 207
Target Start/End: Original strand, 33472311 - 33472402
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataata 207  Q
    ||||||||| |||||| ||||||| ||| |||||||||||||| ||||||||| |||| |||||| |||||| ||||||||||||| |||||    
T  33472311 atgttatttaaacaaccctttattatgacaacttcttatacaatcaaattatacaaagagatttagatagtgatacaaaaatcaaagtaata 33472402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 34307433 - 34307552
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||  |||| |||||| ||||| ||  |||||||||||||| ||||  |||||  ||||| |||||||| ||||  |||  | |||||    
T  34307433 atgttatttgaacaatcctttcttgtgacaacttattggacaaccaaattatacaaagaaatttaggtagtgatacaaaaaccaaagcaatagaaagaga 34307532  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||||||||||||||    
T  34307533 aagtagaagaacaatgtgag 34307552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 29526042 - 29525936
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga-a 214  Q
    |||||||||| |||||  |||||||||| ||||| ||  ||||||||||| || |||   ||||| ||||||| ||||||||||||| |||| ||||| |    
T  29526042 atgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaaaaaatttagatagtggcacaaaaatcaaaacaatagagagaga 29525943  T
Q  215 agtagaa 221  Q
    |||||||    
T  29525942 agtagaa 29525936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 9862709 - 9862613
Alignment:
Q  119 ttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagagaaa 215  Q
    |||||||||||||  |||||||||| ||| |||||| ||||||||||||| ||     |||| ||||||| |||||||||||| ||||  |||||||    
T  9862709 ttatttgaacaaccttttattgtgacaacctcttatgcaaccaaattatacaacatagtttagatagtggcacaaaaatcaaagtaattgagagaaa 9862613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 32363110 - 32362995
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagagaaa 215  Q
    ||||||||||||||||  |||  ||||| || || ||  ||||||| |||||| |||| ||||||  |||||| | ||| ||||||  |||| |||||||    
T  32363110 atgttatttgaacaaccttttcatgtgacaatttattggacaaccacattatacaaagagatttaggtagtggcataaatatcaaagcaatagagagaaa 32363011  T
Q  216 gtagaagaacaatgtg 231  Q
    ||| ||||||||||||    
T  32363010 gtaaaagaacaatgtg 32362995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 31104843 - 31104727
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||| ||| |||||| || || ||  ||||| ||||||||  |||  |||||  |||||  ||||||||||||| |||  | |||||    
T  31104843 atgttatttgaacaactttttcttgtgacaatttgtttgacaactaaattatacgaagaaatttaggtagtgacacaaaaatcaaaacaatagagagaga 31104744  T
Q  214 aagtagaagaacaatgt 230  Q
    ||||||||| |||||||    
T  31104743 aagtagaaggacaatgt 31104727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 26480982 - 26481101
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatag--aga 213  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||  |||||||||||| ||||| ||  |||    
T  26480982 atgttatttgaacaaccctttattgtgacaacttcttatacaaccaaattatacaaagggatttagatagtgacacaaaaatcaaagtaatagagaaaga 26481081  T
Q  214 aagtagaagaacaatgtgag 233  Q
    |||||||| ||||| |||||    
T  26481082 aagtagaaaaacaacgtgag 26481101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 30831933 - 30831814
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||   |||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| ||||  | |||||    
T  30831933 atgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaagggatttagatagtggcacaaaaatcaaagtaatagagagaga 30831834  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||||||||||||||    
T  30831833 aagtagaagaacaatgtgag 30831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 37003766 - 37003670
Alignment:
Q  139 tgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaagtagaagaacaatgtgag 233  Q
    ||||| |||||||||||||||||||||||| |||||| |||| ||||||| | |||||||||| ||||  | |||||| ||||||||||||||||||    
T  37003766 tgtgacaacttcttatacaaccaaattatacaaaggggtttagatagtggcataaaaatcaaagtaataaagagagaatgtagaagaacaatgtgag 37003670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 11965972 - 11965855
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||  |||  ||||| ||||| ||  ||||||| |||||| | ||  ||||| ||||||| ||||||||||||  |||  | |||||    
T  11965972 atgttatttgaacaacctttttatgtgacaacttgttggacaaccacattatacatagaaatttagatagtggcacaaaaatcaaagcaatagagagaga 11965873  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  11965872 aagtagaagaacaatgtg 11965855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 14872050 - 14871953
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga 213  Q
    ||||||||||||||||  ||| |||| | ||||| ||| |||| ||||||||| ||||  |||||  |||||| ||||||||||||| |||| |||||    
T  14872050 atgttatttgaacaaccatttcttgtaacaacttgttagacaatcaaattatacaaagaaatttaggtagtggcacaaaaatcaaaacaatagagaga 14871953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 14877168 - 14877075
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatata 209  Q
    ||||||||||||||||  ||| |||||| ||||| ||| |||||||||||  | ||||  |||||  |||||| ||||||||||||| ||||||    
T  14877168 atgttatttgaacaaccatttcttgtgacaacttgttagacaaccaaatttaacaaagaaatttaggtagtggcacaaaaatcaaaacaatata 14877075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 37731092 - 37731209
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatataga--ga 213  Q
    ||||||||||||||||  |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  |||||| ||||| ||||||  |||| |||  ||    
T  37731092 atgttatttgaacaacctttttatgtgacaacttgttgcacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaatagagagcga 37731191  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  37731192 aagtagaagaacaatgtg 37731209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 4213251 - 4213132
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||| ||||||  |||||||||||| ||||  | |||||    
T  4213251 atgttatttgaacaaccctttattgtgacaacttcttatacaaccaaattatataaaaagatttagatagtgacacaaaaatcaaagtaatagagagaga 4213152  T
Q  214 aagtagaagaacaatgtgag 233  Q
    | ||||||||||||||||||    
T  4213151 aggtagaagaacaatgtgag 4213132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 7918954 - 7919073
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagag--a 213  Q
    |||||||||||||||| |||| |||||| ||||| ||| |||||||||||||| ||||  |||||  |||||| |||||||||||| ||||| ||||  |    
T  7918954 atgttatttgaacaaccctttcttgtgacaacttgttagacaaccaaattatacaaagaaatttaggtagtggcacaaaaatcaaagtaatagagagata 7919053  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||| ||||| ||||    
T  7919054 aagtagaaggacaatatgag 7919073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 237
Target Start/End: Complemental strand, 4858087 - 4857966
Alignment:
Q  118 gttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga--aa 215  Q
    ||||||||||||||  |||  |||||||| || ||  ||||||| |||||| ||||  |||||| |||||| ||||| ||||||  |||| |||||  ||    
T  4858087 gttatttgaacaacctttttatgtgataatttattggacaaccacattatacaaagaaatttaagtagtggcacaaatatcaaagcaatagagagagaaa 4857988  T
Q  216 gtagaagaacaatgtgagcatg 237  Q
    |||||||||||||||| |||||    
T  4857987 gtagaagaacaatgtgtgcatg 4857966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 27742723 - 27742679
Alignment:
Q  187 ggtacaaaaatcaaaataatatagagaaagtagaagaacaatgtg 231  Q
    |||||||||||||||  |||| |||||| ||||||||||||||||    
T  27742723 ggtacaaaaatcaaagcaatagagagaatgtagaagaacaatgtg 27742679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 55266204 - 55266086
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||  |||||||||||| ||||  | |||||    
T  55266204 atgttatttgaacaatcctttattgtgataacttcttatacaactaaattatataaatggatttagatagtgacacaaaaatcaaagtaataaagagaga 55266105  T
Q  214 aagtagaagaacaatgtga 232  Q
    ||||| ||| |||||||||    
T  55266104 aagtaaaaggacaatgtga 55266086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 21014176 - 21014101
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtac 191  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  21014176 atgttatttgaacaaccttttattgtgacaacttcttatacaaccaaattatacaaagggatttagatagtggtac 21014101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 50050815 - 50050700
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagaga-a 214  Q
    ||||||| ||||||||| |||||||||| ||||| ||||||||| || ||||| ||||||||||| ||||||| | |||||||||| || || ||||| |    
T  50050815 atgttatatgaacaactatttattgtgacaactttttatacaactaagttatacaaagggatttagatagtggcataaaaatcaaagtattagagagaga 50050716  T
Q  215 agtagaagaacaatgt 230  Q
    | ||||||||||||||    
T  50050715 aatagaagaacaatgt 50050700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 39158284 - 39158165
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||  |||||||||| ||||| ||  |||||||||||||| ||||  |||||  ||| || ||||||| ||||| |||  | |||||    
T  39158284 atgttatttgaacaaccatttattgtgacaacttattggacaaccaaattatacaaagaaatttaggtagcggcacaaaaaccaaaacaatagaaagaga 39158185  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||||| ||||||||    
T  39158184 aagtagaagaataatgtgag 39158165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 2004081 - 2004200
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataa--tatagaga 213  Q
    ||||||||||||||||  ||| |||||||||| | ||| |||| ||||| ||||||||  |||||  ||||| |||||||||||||  ||  || |||||    
T  2004081 atgttatttgaacaaccttttcttgtgataacctattagacaatcaaataatataaagaaatttaggtagtgatacaaaaatcaaagcaatgtagagaga 2004180  T
Q  214 aagtagaagaacaatgtgag 233  Q
    |||||||||  |||||||||    
T  2004181 aagtagaagggcaatgtgag 2004200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 41262237 - 41262356
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatag--aga 213  Q
    ||||||||||||||||  ||| |||||| ||| | ||| |||||||||| ||| ||||  ||||| ||| ||| ||||||||||||  |||| ||  |||    
T  41262237 atgttatttgaacaaccttttcttgtgacaacctattagacaaccaaataatacaaagaaatttagataatggcacaaaaatcaaagcaatagagaaaga 41262336  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||| ||||||||||    
T  41262337 aagtagaaggacaatgtgag 41262356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 48494867 - 48494922
Alignment:
Q  176 atttaaatagtggtacaaaaatcaaaataatatagagaaagtagaagaacaatgtg 231  Q
    ||||| ||||||||| ||||||||||| |||| |||||| ||||||||||||||||    
T  48494867 atttagatagtggtataaaaatcaaaaaaatagagagaatgtagaagaacaatgtg 48494922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 13196833 - 13196937
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||| ||| ||| || ||||| || || || |||| |||||||||  |||||| || ||| |||||||||||| ||||  |||||||    
T  13196833 atgttatttgaacaactatttgttgggacaactttttgtaaaatcaaaatatataaagaaatttaagtattggaacaaaaatcaaagtaatcgatagaga 13196932  T
Q  214 aagta 218  Q
    |||||    
T  13196933 aagta 13196937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 38519972 - 38519887
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    |||||||||| | |||  |||||||||| ||||| ||  ||||||||||| || ||||  ||||||||||||| ||||||||||||    
T  38519972 atgttatttgtataaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttaaatagtggcacaaaaatcaaa 38519887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 51255925 - 51255840
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    |||||||||| |||||  |||||||||| ||||| ||  ||||||||||| || ||||  ||||| ||||||| ||||||||||||    
T  51255925 atgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcacaaaaatcaaa 51255840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 52205026 - 52204910
Alignment:
Q  119 ttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaag 216  Q
    ||||||||||||   ||| || ||||||||| ||  |||||||||||||| ||||  |||||| |||||  ||||||||||||  |||  | ||||||||    
T  52205026 ttatttgaacaatcttttcttatgataacttgttggacaaccaaattataaaaagaaatttaagtagtgacacaaaaatcaaagcaatagagagagaaag 52204927  T
Q  217 tagaagaacaatgtgag 233  Q
    ||||| |||||||||||    
T  52204926 tagaaaaacaatgtgag 52204910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 5386547 - 5386432
Alignment:
Q  120 tatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaagt 217  Q
    ||||||||||||  ||| |||||| ||||| ||| ||||| |||||||| ||||  ||||| |||||   ||||||||||||  |||  | |||||||||    
T  5386547 tatttgaacaaccatttcttgtgacaactttttagacaactaaattatacaaagaaatttagatagtaacacaaaaatcaaagcaatagagagagaaagt 5386448  T
Q  218 agaagaacaatgtgag 233  Q
    | ||||| ||||||||    
T  5386447 aaaagaataatgtgag 5386432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 6416 - 6531
Alignment:
Q  120 tatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaagt 217  Q
    ||||||||||||  |||||||| | ||||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||| ||||  | |||||||||    
T  6416 tatttgaacaaccttttattgttacaacttcttatacaaccaaactatacaaagggatttagatagtgacacaaaaatcaaagtaatagagagagaaagt 6515  T
Q  218 agaagaacaatgtgag 233  Q
    ||||||||||||||||    
T  6516 agaagaacaatgtgag 6531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 11635430 - 11635545
Alignment:
Q  119 ttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaag 216  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| |||||| ||||||| |||||||||||| ||||  | |||||||     
T  11635430 ttatttgaacaaccctttattgtgacaatttcttatacaaccaaattatacaaagagatttagatagtggcacaaaaatcaaagtaatagagagagaaaa 11635529  T
Q  217 tagaagaacaatgtga 232  Q
    ||||||| ||||||||    
T  11635530 tagaagagcaatgtga 11635545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 17182277 - 17182178
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagagaaa 215  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||| ||||||||||| ||||||| | |||||||||| ||||| |||||||    
T  17182277 atgttatttgaacaaccctttattatgacaacttcttatacaatcaaattatacaaagggatttagatagtggcataaaaatcaaagtaatagagagaaa 17182178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 1287092 - 1287002
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat 206  Q
    |||||||||||||||  ||||||||||| ||||||||||||||| |||||||| ||| | ||||| ||||||  |||||||||||| ||||    
T  1287092 atgttatttgaacaatcctttattgtgacaacttcttatacaactaaattatacaaaagaatttagatagtgacacaaaaatcaaagtaat 1287002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 18064982 - 18065099
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||| |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  |||||| ||||| ||||||  |||  | |||||    
T  18064982 atgttatttgaacaacttttttatgtgacaacttgttggacaaccacattatacaaagaaatttaggtagtggcacaaatatcaaagcaatagagagaga 18065081  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  18065082 aagtagaagaacaatgtg 18065099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 16971992 - 16972108
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||   |||||||||| |||||||||||||| ||||||||| ||||||||||| | | ||  |||||||||||| ||||  | |||||    
T  16971992 atgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaagggatttagagactgacacaaaaatcaaagtaatagagagaga 16972091  T
Q  214 aagtagaagaacaatgt 230  Q
    |||||||||||||||||    
T  16972092 aagtagaagaacaatgt 16972108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 11954610 - 11954491
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatag--aga 213  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||| |||||||| |||| || ||| ||||||| |||||||||||| ||||| ||  |||    
T  11954610 atgttatttgaacaaccatttattttgacaacttcttatacaactaaattatacaaagtgacttagatagtggcacaaaaatcaaagtaatagagaaaga 11954511  T
Q  214 aagtagaagaacaatgtgag 233  Q
    || || || |||||||||||    
T  11954510 aaataaaataacaatgtgag 11954491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 42446183 - 42446302
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagag--a 213  Q
    ||||||||||||||||  ||| |||||| ||| | ||| |||||||||| ||| ||||  |||||  || ||| ||||||||||||  |||| ||||  |    
T  42446183 atgttatttgaacaacattttcttgtgacaacctattagacaaccaaataatacaaagaaatttaggtaatggcacaaaaatcaaagcaatagagagaaa 42446282  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||| ||||||||||    
T  42446283 aagtagaaggacaatgtgag 42446302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 35075474 - 35075569
Alignment:
Q  120 tatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagagaaa 215  Q
    |||||||||||| |||||||| || ||||||||| |||||||   |||| |||   ||||| ||| ||||||||||||||||  |||| |||||||    
T  35075474 tatttgaacaaccctttattgggacaacttcttagacaaccatcatatacaaacaaatttagatattggtacaaaaatcaaagcaatagagagaaa 35075569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 43807706 - 43807824
Alignment:
Q  117 tgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaa 214  Q
    ||||||||||||||| |||| || ||| || || || ||||||||||||||| ||||  |||||| |||||  |||||||||||| ||||  | ||||||    
T  43807706 tgttatttgaacaaccctttcttatgacaatttgttgtacaaccaaattatacaaagacatttaagtagtgacacaaaaatcaaattaatagaaagagaa 43807805  T
Q  215 agtagaagaacaatgtgag 233  Q
    |||| ||||||||||||||    
T  43807806 agtaaaagaacaatgtgag 43807824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 46881081 - 46880962
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||| ||||||| ||| || || |||||||||||||||||| || |  ||||| |||||||   |||||||||| ||||  | |||||    
T  46881081 atgttatttgaacaaccctttattatgacaattttttatacaaccaaattatacaacgacatttagatagtggcgaaaaaatcaaagtaatagagagaga 46880982  T
Q  214 aagtagaagaacaatgtgag 233  Q
     |||||||||||||| ||||    
T  46880981 tagtagaagaacaatatgag 46880962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 12007078 - 12007163
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    |||||||||| |||||| |||||||||| ||||| ||  ||||||||||| || ||||  ||||| ||||||| ||||||||||||    
T  12007078 atgttatttgtacaactatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggcacaaaaatcaaa 12007163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 29723817 - 29723902
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    |||||||||| |||||  |||||||||| ||||| ||  ||||||||||| || ||||  ||||| ||||||||||||||||||||    
T  29723817 atgttatttgtacaaccatttattgtgacaacttgttggacaaccaaattttacaaagaaatttagatagtggtacaaaaatcaaa 29723902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 233
Target Start/End: Original strand, 32777599 - 32777718
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    |||||||||||||||   ||| |||| ||||||| ||  |||||||||||||| ||||  |||||  |||||| |||||||||||| ||||  | |||||    
T  32777599 atgttatttgaacaatcttttcttgtaataacttgttggacaaccaaattatacaaagaaatttaggtagtggcacaaaaatcaaagtaatggagagaga 32777698  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||| ||| ||||||    
T  32777699 aagtagaaggacagtgtgag 32777718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 27570522 - 27570437
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    ||||||| || |||||| |||||||||| ||||| ||  ||||||||||| || ||||  ||||  ||||||| ||||||||||||    
T  27570522 atgttatctgtacaactatttattgtgacaacttattggacaaccaaattttacaaagaaattttgatagtggcacaaaaatcaaa 27570437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 28249462 - 28249547
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaa 201  Q
    ||||||||||||||||  ||| |||||| ||||| ||  ||||| |||||||| ||||  |||||| |||||  ||||||||||||    
T  28249462 atgttatttgaacaaccatttcttgtgacaactttttggacaactaaattatacaaagaaatttaagtagtgacacaaaaatcaaa 28249547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 8651 - 8532
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||||||||||| ||| |||||| ||||| ||| ||||| |||||||||||||  |||||  | |||  ||||||||||||  |||  | |||||    
T  8651 atgttatttgaacaactatttcttgtgacaacttgttagacaactaaattatataaagaaatttagttggtgacacaaaaatcaaagcaatagaaagaga 8552  T
Q  214 aagtagaagaacaatgtgag 233  Q
    ||||||||| ||||||||||    
T  8551 aagtagaaggacaatgtgag 8532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 28223 - 28336
Alignment:
Q  120 tatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagagaaagt 217  Q
    ||||||||||||| |||  | ||| ||||| ||| |||||||  ||||||| ||  ||||| ||||||| | |||||||||| ||||  | |||||||||    
T  28223 tatttgaacaacttttttatctgacaacttgttagacaaccacgttatatatagaaatttatatagtggcataaaaatcaaagtaatagagagagaaagt 28322  T
Q  218 agaagaacaatgtg 231  Q
    ||||||||||||||    
T  28323 agaagaacaatgtg 28336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 8845 - 8962
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataatatagag--a 213  Q
    ||||||||||||||||  |||  ||||| ||||| ||  ||||||| |||||| ||||  |||||  |||||  ||||||||||||  |||| ||||  |    
T  8845 atgttatttgaacaaccttttcatgtgacaactttttggacaaccacattatacaaagaaatttaggtagtgacacaaaaatcaaagcaatagagagaga 8944  T
Q  214 aagtagaagaacaatgtg 231  Q
    ||||||||||||||||||    
T  8945 aagtagaagaacaatgtg 8962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 13449 - 13556
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||| ||||||||||| |||||| ||||| ||  ||||| |||||||| ||||  |||||   |||| |||||||||| || ||||  | |||||    
T  13449 atgttatttaaacaactcttttttgtgacaacttattggacaactaaattatacaaagaaatttaggcagtgatacaaaaatcgaagtaatagaaagaga 13548  T
Q  214 aagtagaa 221  Q
    ||||||||    
T  13549 aagtagaa 13556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 59395 - 59288
Alignment:
Q  116 atgttatttgaacaactctttattgtgataacttcttatacaaccaaattatataaagggatttaaatagtggtacaaaaatcaaaataat--atagaga 213  Q
    ||||||||| ||||||||||| |||||| ||||| ||  ||||| |||||||| ||||  |||||   |||| |||||||||| || ||||  | |||||    
T  59395 atgttatttaaacaactcttttttgtgacaacttattggacaactaaattatacaaagaaatttaggcagtgatacaaaaatcgaagtaatagaaagaga 59296  T
Q  214 aagtagaa 221  Q
    ||||||||    
T  59295 aagtagaa 59288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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