View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17709_high_15 (Length: 252)
Name: NF17709_high_15
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 1842088 - 1841918
Alignment:
| Q |
68 |
gattttagtccctcagtttcataagtttgaggatatannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
1842088 |
gattttagtccctcagtttcataagtttgaggatatatttttttcacaatccaattgcaagcttattcttgatg--acttgtcattttcattaatgacgt |
1841991 |
T |
|
| Q |
168 |
gaaattacattttagtgttcccttgttccttgaagttgtggtatgttttgagattcgtgatttatatgattca |
240 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1841990 |
gaaattacattttaatgttcccctgttccttgaagttgtggtatgttttgagattcgtgacttatatgattca |
1841918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 1842171 - 1842111
Alignment:
| Q |
17 |
aaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacatgattttagtc |
77 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1842171 |
aaaaatataggcttaaaggcacttctcgtccctatcttttaactgaaacatgattttagtc |
1842111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 1840586 - 1840749
Alignment:
| Q |
17 |
aaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacat----gattttagtccctcagtttcataagtttgaggata-tannnnnnn |
111 |
Q |
| |
|
||||||||||||||||| ||||| |||| || |||||||||||| | || |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
1840586 |
aaaaatataggcttaaatgcacttatcgtgtctctcttttaactgataaattcaggattttagtccctcagtttcttaagtttgaggatatttttttttt |
1840685 |
T |
|
| Q |
112 |
cacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgtgaaattacattt |
179 |
Q |
| |
|
||||||||| |||| || | |||||| |||||||||||||||||||||||| || |||||||||| |
|
|
| T |
1840686 |
cacaacccagttgcgagttcattctt----tgacttgtcattttcattaatgacatggaattacattt |
1840749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 41379521 - 41379414
Alignment:
| Q |
68 |
gattttagtccctcagtttcataagtttgaggatatannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgt |
167 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| | ||||||| | |||| ||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
41379521 |
gattttagtcccttagtttcacaagtttgaggattt--ttttttcacaacctagttgcgagcttattctttatg--acttgtcattttcattaatgatgt |
41379426 |
T |
|
| Q |
168 |
gaaattacattt |
179 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41379425 |
ggaattacattt |
41379414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 41379600 - 41379544
Alignment:
| Q |
17 |
aaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacatgatttt |
73 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
41379600 |
aaaaatataggcttaaatgcacttttcgtccctctattttaactgaaacatgatttt |
41379544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 18635298 - 18635472
Alignment:
| Q |
68 |
gattttagtccctcagtttcataagtttgaggata----tannnnnnncacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatg |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18635298 |
gattttagtccctcagtttcataagtttgaggataattttttttttttcacaacccagttgcaagcttattctttatg--acttgtcattttcattaatg |
18635395 |
T |
|
| Q |
164 |
acgtgaaattacattttagtgttcccttgttccttgaagttgtggtatgttttgagattcgtgatttatatgattca |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
18635396 |
acgtgaaattacattttagtgttcccctgttccttgaagttgtggtatgttttgagattcatgacttatatgattca |
18635472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 18636840 - 18636674
Alignment:
| Q |
17 |
aaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacat----gattttagtccctcagtttcataagtttgaggatatannnnnnn- |
111 |
Q |
| |
|
||||||||||||||||| || || |||| || |||||||||||| | || |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18636840 |
aaaaatataggcttaaatgcaattatcgtgtctctcttttaactgataaattcaggattttagtccctcagtttcttaagtttgaggatatttttttttt |
18636741 |
T |
|
| Q |
112 |
-cacaacccaattgcaagcttattctttatgtgacttgtcattttcattaatgacgtgaaattacattt |
179 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18636740 |
tcacaacccagttgcgagtttattctttatg--acttgtcattttcattaatgacgtggaattacattt |
18636674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 18635215 - 18635275
Alignment:
| Q |
17 |
aaaaatataggcttaaagacacttctcgtccctatcttttaactgaaacatgattttagtc |
77 |
Q |
| |
|
||||||||||| ||| || ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18635215 |
aaaaatataggtttacaggcactttccgtccctatctcttaactgaaacatgattttagtc |
18635275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 13211508 - 13211579
Alignment:
| Q |
24 |
taggcttaaagacacttctcgtccctatcttttaactgaaacatgattttagtccctcagtttcataagttt |
95 |
Q |
| |
|
|||||||||| |||||| | |||||||| ||||| ||||||| |||||||||||| |||||||| |||||| |
|
|
| T |
13211508 |
taggcttaaatacacttttggtccctataatttaaatgaaacaagattttagtcccccagtttcacaagttt |
13211579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University