View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_high_19 (Length: 225)
Name: NF17709_high_19
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 14916294 - 14916490
Alignment:
| Q |
20 |
attgatcgattgagatagagtcatagctattacaaagtaaataagatgat---catatgagatatgaagaaatttgactggtccattgacaaaagaatta |
116 |
Q |
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| T |
14916294 |
attgatcgattgtgatag--tcataactattacaaagtaaataagatgatgatcatatgagatatgaagaaatttgactggtccattgacgaaagaatta |
14916391 |
T |
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| Q |
117 |
gtaagag----agagagattaactaatcatttgacgaaatgattaatcagagagggctttgaaaacctcagaaagaatgagactagtgccaagaataat |
211 |
Q |
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| T |
14916392 |
gtaagagagagagagagattaactaatcatttgacgaaatgattagtcagagagggctttgaaaacctcagaaagaatgagactagtgccaagaataat |
14916490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 48516030 - 48515852
Alignment:
| Q |
23 |
gatcgattgagatagagtcatagctattacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaaga |
122 |
Q |
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| T |
48516030 |
gatcgattgtgatagagccatggcaattacaaattaaataagatgatcatatgaggtctaaagaaacttgactaatcctttaaccaaaggattagtaaga |
48515931 |
T |
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| Q |
123 |
gagagagattaactaatcatttgacgaaatgattaatcagagagggctttg-aaaacctcagaaagaatgagactagtg |
200 |
Q |
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| T |
48515930 |
gagatagattgactaattatttgacgaaatgattagtcagagagggttttgaaaaaccttagaaagaatgagactagtg |
48515852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 6788609 - 6788761
Alignment:
| Q |
48 |
attacaaagtaaataagatgatcatatgagatatgaagaaatttgactggtccattgacaaaagaattagtaagagagagagattaactaatcatttgac |
147 |
Q |
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| T |
6788609 |
attataaagtaaataagatgaacatatgatgtttaaagaaatttgattggtactttgacgaaaagattagtaagagagaaagattggttgattatttgac |
6788708 |
T |
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| Q |
148 |
gaaatgattaatcagagagggctttgaaaacctcagaaagaatgagactagtg |
200 |
Q |
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| T |
6788709 |
gaaatgaatagatagagagggctttgtaaacctcaaaaagaatgaaactagtg |
6788761 |
T |
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