View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_high_6 (Length: 366)
Name: NF17709_high_6
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 36516170 - 36516510
Alignment:
| Q |
16 |
gttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaatt |
115 |
Q |
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| T |
36516170 |
gttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaatt |
36516269 |
T |
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| Q |
116 |
caattctccattgttggccattgaattatatcttccctcatcctcctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatata |
215 |
Q |
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| T |
36516270 |
caattctccattgttggccattgaattatatcttccctcatcctcctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatata |
36516369 |
T |
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| Q |
216 |
gctaggttgtgcacaaaatcaaaatcacatgtatgtgggaaagaagnnnnnnngacaattattggacaaagtattcatctattatatatacaccttgtat |
315 |
Q |
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| T |
36516370 |
gctaggttgtgcacaaaatcaaaatcacatgtatgtgggaaagaagaaaaaaagacaattattggacaaagtattcatctattatatatacaccttgtat |
36516469 |
T |
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| Q |
316 |
gatgaaaggttagatcctgaatgtttcttttgaaccctttg |
356 |
Q |
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| T |
36516470 |
gatgaaagggtagatcctgaatgtttcttttgaaccctttg |
36516510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 36805050 - 36804721
Alignment:
| Q |
16 |
gttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaatt |
115 |
Q |
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| T |
36805050 |
gttttatcaatgctcttgcttttgcaagacttccttctaccttctccaaatttctatcttcttgcattgatcttcttataggcaatttgttacctaaatt |
36804951 |
T |
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| Q |
116 |
caattctccattgttggccattgaattatatcttccctcatcctcctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatata |
215 |
Q |
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| T |
36804950 |
caattctccattgtatgccattggcttatatcttccctcatcctcctatatgtacaaaaacaacaaaacaaagtattaatcaaacattaattaccat-ta |
36804852 |
T |
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| Q |
216 |
gctaggttgtgcacaaaatcaaaatcacatgtatgtgggaaagaagnnnnnnngacaattattggacaaagtattcat-----ctattatatatacacct |
310 |
Q |
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| T |
36804851 |
gctagg-tgtgcacaaaatcaaaatcacatgtat------aagaa--------gacaattattgaacaaaatattcgttcatattattatatatacacct |
36804767 |
T |
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| Q |
311 |
tgtatgatgaaaggttagatcctgaatgtttcttttgaaccctttg |
356 |
Q |
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| T |
36804766 |
tgtatgatgaaagggtagatcctgaatgtttcttttgaatcctttg |
36804721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 36538493 - 36538601
Alignment:
| Q |
16 |
gttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttttatctccttgcattgatcttcttataggcaatttgttatctaaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| | |
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| T |
36538493 |
gttttatcaatgctcttgcttttgcaagacttccttcaaccttctccaaatttctatctccttgcattgatcttcttatgggcaatttgttaactaaaat |
36538592 |
T |
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| Q |
116 |
caattctcc |
124 |
Q |
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| T |
36538593 |
caattctcc |
36538601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 161 - 322
Target Start/End: Original strand, 36538617 - 36538777
Alignment:
| Q |
161 |
ctacatgtacaaaaacatcaaaacaaaatattaatcaaacattaattaacatatagctaggttgtgcac-aaaatcaaaatcacatgtatgtgggaaaga |
259 |
Q |
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| T |
36538617 |
ctacatgtacaaaaacaacaaaacaaaatattaatcaaacattaattaatctctagctaggttgtgtacaaaaatcaaaatcacatgtatgtgggaaaaa |
36538716 |
T |
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| Q |
260 |
agnnnnnnngacaattattggacaaagtattcatctattatatatacaccttgtatgatgaaa |
322 |
Q |
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|| || ||||||||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
36538717 |
ag--aagaagaaaattattggacaacgtattcattcatgttatatacaccttgtatgatgaaa |
36538777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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