View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_high_9 (Length: 296)
Name: NF17709_high_9
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 45334901 - 45334635
Alignment:
| Q |
20 |
cacttctctgttttacagtcttcagagttggagggtaatttaactgctgtacaaaatcaaattctttcaaaattttgtttatgaaatacttagccaaaca |
119 |
Q |
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| T |
45334901 |
cacttctctgttttacagtcttcagagttggagggtaatttaactgctgtacaaaatcaaattctttcaaaattttgtttatgaaatacttagccaaaca |
45334802 |
T |
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| Q |
120 |
cacacttagactaattcttctatccttatggaaccatgttcttctaactaactggttgttgtttgcagggaatatttgagacatttgataaggacaggag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45334801 |
cacacttagactaattcttctatccttatggaaccatgttcttctaactaactggttgttgtttgcagggaatatttgagacatttgataaggacaggag |
45334702 |
T |
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| Q |
220 |
tggcagaatcgattcaattgagttgcgagatgcgctgttaagtttgggttatgctgtttctcctatg |
286 |
Q |
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| T |
45334701 |
tggcagaatcaattcaattgagttgcgagatgcgctgttaagtttgggttatgctgtttctcctatg |
45334635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 73 - 283
Target Start/End: Complemental strand, 20789720 - 20789511
Alignment:
| Q |
73 |
aaatcaaattctttcaaaattttgtttatgaaatacttagccaaacacacacttagactaattcttctatccttatggaaccatgttcttctaactaact |
172 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || | | || |||||||| ||| ||||||||||||||||| |
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| T |
20789720 |
aaatcatattctttcaaaattatgtttatgaaatacttagccaaacacacacttagacaaactatactgtccttatgaaacagtgttcttctaactaact |
20789621 |
T |
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| Q |
173 |
ggttgttgtttgcagggaatatttgagacatttgataaggacaggagtggcagaatcgattcaattgagttgcgagatgcgctgttaagtttgggttatg |
272 |
Q |
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| T |
20789620 |
ggttgttgttt-cagggaatatttgagagatttgacaaggataggagtggcaaaattgattcaaatgagttgcgagatgcgctgttgagtttgggttatg |
20789522 |
T |
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| Q |
273 |
ctgtttctcct |
283 |
Q |
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||||||||||| |
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| T |
20789521 |
ctgtttctcct |
20789511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 20790047 - 20790011
Alignment:
| Q |
20 |
cacttctctgttttacagtcttcagagttggagggta |
56 |
Q |
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||||||||| ||||||||||||||||| ||||||||| |
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| T |
20790047 |
cacttctctattttacagtcttcagagctggagggta |
20790011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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