View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17709_low_1 (Length: 506)

Name: NF17709_low_1
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17709_low_1
NF17709_low_1
[»] chr6 (3 HSPs)
chr6 (1-311)||(4435394-4435705)
chr6 (313-490)||(4436623-4436800)
chr6 (180-311)||(4091795-4091926)
[»] chr3 (2 HSPs)
chr3 (1-311)||(46595133-46595444)
chr3 (313-490)||(46594038-46594215)
[»] chr1 (2 HSPs)
chr1 (1-311)||(25868592-25868903)
chr1 (1-311)||(16961006-16961320)
[»] chr5 (3 HSPs)
chr5 (1-294)||(37719392-37719685)
chr5 (313-490)||(37718360-37718537)
chr5 (2-311)||(30440603-30440900)
[»] chr8 (1 HSPs)
chr8 (106-266)||(38016484-38016644)
[»] chr4 (1 HSPs)
chr4 (190-311)||(47521067-47521188)
[»] chr2 (1 HSPs)
chr2 (382-459)||(32280388-32280465)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-171)||(81770-81823)


Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 4435394 - 4435705
Alignment:
Q  1 ccagtcaatgctctgctcttcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattc 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4435394 ccagtcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattc 4435493  T
Q  101 a-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctcc 199  Q
    | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  4435494 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctcc 4435593  T
Q  200 aggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatttgatttaacgttaaattaag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||    
T  4435594 aggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaag 4435693  T
Q  300 tgaattttgtat 311  Q
    ||||||||||||    
T  4435694 tgaattttgtat 4435705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 313 - 490
Target Start/End: Original strand, 4436623 - 4436800
Alignment:
Q  313 ttcaaatccatttcccagatagggaataatagtttttgctgcatgttcggctcccaacaaattctcctgtcatgtgtcaccgacgagctgaagtggaagc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4436623 ttcaaatccatttcccagatagggaataatagtttttgctgcacgttcggctcacaacaaattctcctgtcatgtgtcaccgacgagctgaagtggaagc 4436722  T
Q  413 tccacgagagaagacaaaaaagcagcaagaccgttgtgaggtttgagaacctccctttttccttttcaatttcttttg 490  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4436723 tccacgagagcagacaaaaaagcagcaagacctttgtgaggtttgagaacctccctttttccttttcaatttcttttg 4436800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 4091795 - 4091926
Alignment:
Q  180 tgacctaattccatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatt 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||   |||||    
T  4091795 tgacctaattccatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaatttcagaattaaatatctgggtttatttatgtttatt 4091894  T
Q  280 tgatttaacgttaaattaagtgaattttgtat 311  Q
    ||||||||||||||||||||||||||||||||    
T  4091895 tgatttaacgttaaattaagtgaattttgtat 4091926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 46595444 - 46595133
Alignment:
Q  1 ccagtcaatgctctgctcttcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattc 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46595444 ccagtcgatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattc 46595345  T
Q  101 a-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctcc 199  Q
    | || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  46595344 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctcc 46595245  T
Q  200 aggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatttgatttaacgttaaattaag 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||    
T  46595244 aggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaag 46595145  T
Q  300 tgaattttgtat 311  Q
    ||||||||||||    
T  46595144 tgaattttgtat 46595133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 313 - 490
Target Start/End: Complemental strand, 46594215 - 46594038
Alignment:
Q  313 ttcaaatccatttcccagatagggaataatagtttttgctgcatgttcggctcccaacaaattctcctgtcatgtgtcaccgacgagctgaagtggaagc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46594215 ttcaaatccatttcccagatagggaataatagtttttgctgcacgttcggctcacaacaaattctcctgtcatgtgtcaccgacgagctgaagtggaagc 46594116  T
Q  413 tccacgagagaagacaaaaaagcagcaagaccgttgtgaggtttgagaacctccctttttccttttcaatttcttttg 490  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46594115 tccacgagagcagacaaaaaagcagcaagacctttgtgaggtttgagaacctccctttttccttttcaatttcttttg 46594038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 25868592 - 25868903
Alignment:
Q  1 ccagtcaatgctctgctcttcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattc 100  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  25868592 ccagtaaatgctctgctcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcatattc 25868691  T
Q  101 a-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctcc 199  Q
    | || ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25868692 atctcgcatcaaatccagatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttatcc 25868791  T
Q  200 aggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatttgatttaacgttaaattaag 299  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||    
T  25868792 aggtattcaatctatcccaatctgatgtatgctaatttattaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaag 25868891  T
Q  300 tgaattttgtat 311  Q
    ||||||||||||    
T  25868892 tgaattttgtat 25868903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 16961320 - 16961006
Alignment:
Q  1 ccagtcaatgctctgctctt---catcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcata 97  Q
    |||||| |||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  16961320 ccagtcgatgctctgctctttttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcata 16961221  T
Q  98 ttca-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttc 196  Q
    |||| || |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16961220 ttcatctcgcatcaaatccagatctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttc 16961121  T
Q  197 tccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatttgatttaacgttaaatt 296  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||   |||||| |||||||||||||||    
T  16961120 tccaggtattcaatctatcacaatctgatgtatgctaatttgttaattttagaattaaatatttgggtttatttatgtttatttaatttaacgttaaatt 16961021  T
Q  297 aagtgaattttgtat 311  Q
    |||||||||||||||    
T  16961020 aagtgaattttgtat 16961006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37719685 - 37719392
Alignment:
Q  1 ccagtcaatgctctgctcttcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatattc 100  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  37719685 ccagtcgatgctctgctcttcatcctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcatattc 37719586  T
Q  101 a-ctagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctcc 199  Q
    | || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  37719585 atctcgcatcaaatccagatctcgaaatcctctgcatctcgatctgttggttttaacc-atgaaaaaacattgattttgctgacctaatttcatttctcc 37719487  T
Q  200 aggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatttgatttaacgttaaa 294  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  37719486 aggtattcaatctatcccaatctgatgtatgctaatttgctaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaa 37719392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 313 - 490
Target Start/End: Complemental strand, 37718537 - 37718360
Alignment:
Q  313 ttcaaatccatttcccagatagggaataatagtttttgctgcatgttcggctcccaacaaattctcctgtcatgtgtcaccgacgagctgaagtggaagc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37718537 ttcaaatccatttcccagatagggaataatagtttttgctgcacgttcggctcacaacaaattctcctgtcatgtgtcaccgacgagctgaagtggaagc 37718438  T
Q  413 tccacgagagaagacaaaaaagcagcaagaccgttgtgaggtttgagaacctccctttttccttttcaatttcttttg 490  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37718437 tccacgagagcagacaaaaaagcagcaagacctttgtgaggtttgagaacctcccttttaccttttcaatttcttttg 37718360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 2 - 311
Target Start/End: Complemental strand, 30440900 - 30440603
Alignment:
Q  2 cagtcaatgctctgct---cttcatcctcatcgactcaagcttcggccaccttccgtaaaccaccacgagaccgtgagttgagagtgaacatattcatat 98  Q
    ||||| ||||||||||   ||||||| |||| | ||| |||| | |||||||| ||||||||||||| |||| ||||||||||| |||||||||||||      
T  30440900 cagtcgatgctctgctcttcttcatcgtcattgcctctagctccagccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcat-- 30440803  T
Q  99 tcactagcatcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctc 198  Q
       ||  ||||||||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||  |    
T  30440802 ---ctcacatcaaatccagatctcaaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaattccattttcc 30440706  T
Q  199 caggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgttatttgatttaacgttaaattaa 298  Q
    ||||||||          |||| || ||||||||||||||| |||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||    
T  30440705 caggtatt----------caatttgttgtatgctaatttgtgaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaa 30440616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 106 - 266
Target Start/End: Complemental strand, 38016644 - 38016484
Alignment:
Q  106 catcaaatccagatctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtat 205  Q
    |||||||| |||||||  ||||| ||||||||| ||||||||| ||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  38016644 catcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaattccatttctccaggtat 38016545  T
Q  206 tcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggttt 266  Q
    |||||||||| |||| || | ||||||||||||||| ||||| || ||||||| |||||||    
T  38016544 tcaatctatctcaatatgttttatgctaatttgttagttttaaaattaaatatgtgggttt 38016484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 190 - 311
Target Start/End: Original strand, 47521067 - 47521188
Alignment:
Q  190 ccatttctccaggtattcaatctatcccaatctgatgtatgctaatttgttaattttagaagtaaatatctgggtttatttaatgtt-atttgatttaac 288  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| ||||||||| | ||||| ||||||||||||    
T  47521067 ccatttctccaggtattcaatctatctcaatctgatgtatgctaatttgttaattttagaatcaaatatatgggtttatat-atgttcatttgatttaac 47521165  T
Q  289 gttaaattaagtgaattttgtat 311  Q
    |||||||||||||||||||||||    
T  47521166 gttaaattaagtgaattttgtat 47521188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 32280388 - 32280465
Alignment:
Q  382 tcatgtgtcaccgacgagctgaagtggaagctccacgagagaagacaaaaaagcagcaagaccgttgtgaggtttgag 459  Q
    |||| |||||||| | |||| ||||||||  |||||||||||||| |||||||| ||||||||  |||||||||||||    
T  32280388 tcatttgtcaccggcaagctaaagtggaatttccacgagagaagataaaaaagcggcaagacctatgtgaggtttgag 32280465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 81823 - 81770
Alignment:
Q  118 atctcgaaatcctctgcatctcgatctgttgattttaacccatgaaaaaacatt 171  Q
    |||| |||||| ||| ||||||||||||||| ||| |||||||||||| |||||    
T  81823 atcttgaaatcatctacatctcgatctgttggtttcaacccatgaaaacacatt 81770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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