View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_10 (Length: 298)
Name: NF17709_low_10
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 2835747 - 2836026
Alignment:
| Q |
8 |
gaaacagattctgtagactaatttaaccagtatctcactatgtcattcnnnnnnnnnn-aaccatccggttcctaagggaagggtactctgaaaatccag |
106 |
Q |
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| T |
2835747 |
gaaacagattctgtagactaatttaaccagtatctcactatgtcattctttttttttttaaccatccggttcctaagggaagggtactctgataatccag |
2835846 |
T |
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| Q |
107 |
agttcggccggtaggtaagtaaatcctagaaaaaacatgttccacctaagaatcgaatttaggtactcccgagctatttgcccttaggggagttcagtaa |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835847 |
agttcggccagtaggtaagtaaatcctagaaaaaacatgttccacctaagaatcgaatttaggtactcccgagctatttgcccttaggggagttcagtaa |
2835946 |
T |
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| Q |
207 |
ccacttgagccctattacttggttcactatgtcattttgtgagtgatatgcatttgttttcttttgtcaatctctgagat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2835947 |
ccacttgagccctattacttggttcactatgtcattttgtgagtgatatgcatttgttttcttttgtcaatctctgagat |
2836026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 34199126 - 34199158
Alignment:
| Q |
101 |
atccagagttcggccggtaggtaagtaaatcct |
133 |
Q |
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| T |
34199126 |
atccagagttcggccgggaggtaagtaaatcct |
34199158 |
T |
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