View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17709_low_12 (Length: 296)

Name: NF17709_low_12

Description: NF17709

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17709_low_12

[»] chr8 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 192; E-Value: 1e-104

Query Start/End: Original strand, 86 - 285

Target Start/End: Complemental strand, 29850141 - 29849942

Alignment:

Q	86	gaacctttaaatgattttctatgctatggaaagataaattaaataactttaaattcaagacccttaaataattaattgaagggctatcattgtcttgtat	185	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29850141	gaacctttaaatgattttctatgctatagaaagataaattaaataactttaaattcaagacccttaaataattaattgaagggctatcattgtcttgtat	29850042	T

Q	186	tttgcaaccttgttccaatcatcttaagctcaaatttcttgattgatccagcaatgtctctcaatgtagtatccatcacataaggagttttttcacaggt	285	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	29850041	tttgcaaccttgttccaatcatcttaagctcaaatttcttgattgatccagcaatgtctctcaatgtagtatccatcacataaggagttttttcataggt	29849942	T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 198 - 276

Target Start/End: Original strand, 14828372 - 14828450

Alignment:

Q	198	ttccaatcatcttaagctcaaatttcttgattgatccagcaatgtctctcaatgtagtatccatcacataaggagtttt	276	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|
T	14828372	ttccaatcatcttttgctcaaatttcttgatcacaccagcaaggtctctcaaagttgtatccaactcataaggtgtttt	14828450	T

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