View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_16 (Length: 258)
Name: NF17709_low_16
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 43816907 - 43817139
Alignment:
| Q |
20 |
ctttaaggaaaatcaaaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgcttt |
119 |
Q |
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| T |
43816907 |
ctttaaggaaaatcaaaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgcttt |
43817006 |
T |
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| Q |
120 |
ttcagcaatgagtttcatcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcacca |
219 |
Q |
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| T |
43817007 |
ttcagcaatgagtttcatcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctataggagaataaccatgatcacca |
43817106 |
T |
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| Q |
220 |
cccttcatggatagaagtttttccttcttctca |
252 |
Q |
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| T |
43817107 |
cccttcatggatagaagtttttccttcttctca |
43817139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 43824843 - 43825021
Alignment:
| Q |
20 |
ctttaaggaaaatcaaaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccatttcccatgcttt |
119 |
Q |
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| T |
43824843 |
ctttaagaaaaatcaaaagggagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccatttcccatgcttt |
43824942 |
T |
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| Q |
120 |
ttcagcaatgagtttcatcatctttttgaacttgaccatattagattcctcttgttcttcttccaaaccaattcctata |
198 |
Q |
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| T |
43824943 |
ttcagcaacgagtttcatcatctctttgaatttgaccatattagattcctcttgttcttgtagcaaaccatttcctata |
43825021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 43831819 - 43831900
Alignment:
| Q |
28 |
aaaatcaaaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
109 |
Q |
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| T |
43831819 |
aaaatcaaaagggagataatagtcaaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccattt |
43831900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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