View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_18 (Length: 250)
Name: NF17709_low_18
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 30943093 - 30942854
Alignment:
| Q |
14 |
ttctcatagacaattttggaatttcctttttgaaaagcacacaccaaaatgatgtgcatgtttctctagtgtaatttgtctatctattttcnnnnnnnnn |
113 |
Q |
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| T |
30943093 |
ttctcatagacaattttggaattccctttttgaaaagcacacaccaaaatgatgtgtatgtttctctagtgtaatttgtctatcaatttttttttttttt |
30942994 |
T |
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| Q |
114 |
---gtccatgcatctatttagaaaacatgtttgatggtctctgatcctgtagaatttatatttcttgatagaagattttatatttcttgtaaaccattat |
210 |
Q |
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| T |
30942993 |
tttgtccatgcatctatttagaaaacatgtttgatggtctctgatcctgtagaatttatatttcttgatagaagattttatatttcttgtaaaccattat |
30942894 |
T |
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| Q |
211 |
gtgcataaaaaattgatagacctaattagctaaaagtaaa |
250 |
Q |
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| T |
30942893 |
gtgcataaaaaattgatagacctaattagctaaaagtaaa |
30942854 |
T |
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