View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_20 (Length: 249)
Name: NF17709_low_20
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 25865979 - 25866201
Alignment:
| Q |
5 |
acagcaacaacgttgtatccatccaaccccacaaattgtttattaaacaccttgaatctgaaagtttctttgtttattctccacaactgcaatacacaaa |
104 |
Q |
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| T |
25865979 |
acagcaacaacgttatatccatccaaccccacaaattgtttgttaaacaccctaaatctgaaagtttctttgtttattctccacaactgcaatacacaaa |
25866078 |
T |
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| Q |
105 |
ataaataaatatgaggagtatattttaaactatatagtaactttttaatgaaattgagttgcaattaattgatcttactttaaatgtttcccaaccagaa |
204 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25866079 |
ataaataaatatgaagagtatattttaaactatatagtaactttttaatgaaattgagttgcaattaattgatcttactttaaatgtttcccaaccagaa |
25866178 |
T |
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| Q |
205 |
gcacttgaccggtttgcaacaag |
227 |
Q |
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|||||||| |||||||||||||| |
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| T |
25866179 |
gcacttgagcggtttgcaacaag |
25866201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 25817053 - 25817291
Alignment:
| Q |
5 |
acagcaacaacgttgtatccatccaaccccacaaattgtttattaaacaccttgaatctgaaagtttctttgtttattctccacaactgcaatacacaaa |
104 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25817053 |
acagcaacaacgttatatccatccaaccccacaaattgtttgttaaacaccttaaatctgaaagtttctttgtttattctccacaactgcaatacacaaa |
25817152 |
T |
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| Q |
105 |
ataaataaatatgaggagtatattttaaactatatag-----------taactttttaatgaaattgagttgcaattaattgatcttactttaaatgttt |
193 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25817153 |
ataaataaatatgaggagtata-tttaaactatatagtaatgtattactaactttttaatgaaattgagttgcaattaattgatcttactctaaatgttt |
25817251 |
T |
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| Q |
194 |
cccaaccagaagcacttgaccggtttgcaacaagaatggt |
233 |
Q |
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| T |
25817252 |
cccaaccagaagcacttgagcggtttgcaacaagaatggt |
25817291 |
T |
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