View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17709_low_21 (Length: 248)

Name: NF17709_low_21
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17709_low_21
NF17709_low_21
[»] chr4 (23 HSPs)
chr4 (9-231)||(7970313-7970535)
chr4 (62-126)||(44719398-44719462)
chr4 (62-126)||(47372832-47372896)
chr4 (66-126)||(37042701-37042761)
chr4 (62-125)||(7681948-7682011)
chr4 (61-126)||(8598978-8599043)
chr4 (62-126)||(29209212-29209276)
chr4 (62-126)||(41192242-41192306)
chr4 (62-129)||(38903752-38903819)
chr4 (62-129)||(42639054-42639121)
chr4 (62-154)||(2557680-2557773)
chr4 (77-128)||(20105553-20105604)
chr4 (62-125)||(25575005-25575068)
chr4 (62-129)||(54470388-54470455)
chr4 (5-59)||(30298910-30298964)
chr4 (5-59)||(30327778-30327832)
chr4 (62-124)||(31403073-31403135)
chr4 (62-124)||(32339740-32339802)
chr4 (64-126)||(40018226-40018288)
chr4 (62-116)||(55029002-55029056)
chr4 (88-125)||(48174131-48174168)
chr4 (62-129)||(44047404-44047472)
chr4 (62-122)||(55388252-55388312)
[»] chr6 (10 HSPs)
chr6 (62-126)||(32945429-32945493)
chr6 (62-124)||(1747984-1748046)
chr6 (62-126)||(6293429-6293493)
chr6 (62-125)||(34543-34606)
chr6 (62-105)||(35199681-35199723)
chr6 (73-126)||(413275-413328)
chr6 (62-125)||(3210546-3210609)
chr6 (62-126)||(5053707-5053771)
chr6 (73-125)||(7267423-7267475)
chr6 (5-61)||(17841630-17841686)
[»] chr3 (14 HSPs)
chr3 (62-121)||(55244459-55244518)
chr3 (61-136)||(41842550-41842625)
chr3 (62-126)||(42026573-42026637)
chr3 (62-129)||(11284169-11284236)
chr3 (62-124)||(46140588-46140650)
chr3 (62-130)||(41971303-41971371)
chr3 (62-125)||(29601073-29601136)
chr3 (62-125)||(49841797-49841860)
chr3 (5-46)||(33359738-33359779)
chr3 (86-123)||(39535440-39535477)
chr3 (1-57)||(6525717-6525773)
chr3 (31-63)||(36515012-36515044)
chr3 (86-126)||(46367424-46367464)
chr3 (66-126)||(50237671-50237731)
[»] chr7 (13 HSPs)
chr7 (65-124)||(6807388-6807447)
chr7 (62-126)||(22174181-22174245)
chr7 (1-60)||(25791616-25791675)
chr7 (88-154)||(21078124-21078190)
chr7 (63-129)||(3629557-3629623)
chr7 (87-124)||(39812144-39812181)
chr7 (61-125)||(9210742-9210806)
chr7 (62-126)||(12966197-12966261)
chr7 (61-129)||(14057658-14057726)
chr7 (61-129)||(14367686-14367754)
chr7 (1-61)||(21139030-21139090)
chr7 (1-61)||(32308082-32308142)
chr7 (68-124)||(36245295-36245350)
[»] chr1 (25 HSPs)
chr1 (65-124)||(17815663-17815722)
chr1 (62-126)||(38869063-38869127)
chr1 (62-125)||(7124322-7124385)
chr1 (62-124)||(40920568-40920630)
chr1 (62-126)||(6025786-6025850)
chr1 (62-126)||(38877380-38877444)
chr1 (62-126)||(42501289-42501353)
chr1 (87-126)||(14225873-14225912)
chr1 (62-129)||(15577599-15577666)
chr1 (86-129)||(30396763-30396806)
chr1 (78-129)||(50257767-50257818)
chr1 (62-104)||(13827639-13827681)
chr1 (62-120)||(25460162-25460220)
chr1 (1-46)||(9690309-9690354)
chr1 (73-126)||(10569108-10569161)
chr1 (62-123)||(30017092-30017153)
chr1 (62-126)||(109030-109094)
chr1 (86-126)||(2545136-2545176)
chr1 (62-94)||(17267799-17267831)
chr1 (62-94)||(17275366-17275398)
chr1 (63-123)||(24596767-24596827)
chr1 (62-126)||(27072524-27072588)
chr1 (62-126)||(34444537-34444601)
chr1 (1-45)||(36878439-36878483)
chr1 (61-129)||(48865741-48865809)
[»] chr2 (15 HSPs)
chr2 (62-126)||(8197578-8197642)
chr2 (62-126)||(8202338-8202402)
chr2 (62-125)||(37470171-37470234)
chr2 (62-128)||(26784375-26784441)
chr2 (74-125)||(16626002-16626053)
chr2 (62-128)||(19336928-19336994)
chr2 (62-124)||(32402681-32402743)
chr2 (77-129)||(6219161-6219213)
chr2 (61-129)||(9496046-9496114)
chr2 (62-130)||(19235017-19235085)
chr2 (62-130)||(33287602-33287670)
chr2 (1-43)||(37411281-37411323)
chr2 (73-126)||(8187299-8187352)
chr2 (74-123)||(29159286-29159335)
chr2 (86-126)||(19224986-19225026)
[»] chr8 (15 HSPs)
chr8 (62-126)||(23492215-23492279)
chr8 (62-120)||(11733928-11733986)
chr8 (64-126)||(12611680-12611742)
chr8 (62-106)||(3638390-3638434)
chr8 (62-126)||(39967536-39967600)
chr8 (62-125)||(30748644-30748707)
chr8 (87-124)||(26642708-26642745)
chr8 (62-126)||(14459076-14459140)
chr8 (87-123)||(26639232-26639268)
chr8 (88-124)||(27480168-27480204)
chr8 (62-126)||(29520830-29520894)
chr8 (62-126)||(30783079-30783143)
chr8 (1-61)||(31109555-31109615)
chr8 (101-129)||(33118206-33118234)
chr8 (62-126)||(43904702-43904766)
[»] chr5 (16 HSPs)
chr5 (62-126)||(4026365-4026429)
chr5 (62-126)||(18350939-18351003)
chr5 (88-133)||(38657050-38657095)
chr5 (66-126)||(2645175-2645235)
chr5 (62-126)||(12576897-12576961)
chr5 (78-129)||(683735-683786)
chr5 (91-154)||(29922494-29922557)
chr5 (64-126)||(15588427-15588489)
chr5 (62-123)||(27998622-27998683)
chr5 (86-123)||(36123222-36123259)
chr5 (88-129)||(41894280-41894321)
chr5 (1-37)||(3966489-3966525)
chr5 (1-61)||(6035445-6035505)
chr5 (1-37)||(11685925-11685961)
chr5 (4-44)||(27144442-27144482)
chr5 (5-61)||(43001762-43001818)
[»] scaffold0180 (1 HSPs)
scaffold0180 (62-124)||(25482-25544)
[»] scaffold0392 (1 HSPs)
scaffold0392 (73-129)||(6806-6862)
[»] scaffold0287 (1 HSPs)
scaffold0287 (63-129)||(16462-16528)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 7970535 - 7970313
Alignment:
Q  9 attattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatagttaatgagttagatagaaatatagtatatgataaaacattatggtgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970535 attattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatagttaatgagttagatagaaatatagtatatgataaaacattatggtgt 7970436  T
Q  109 cgtttgatccatgtagccaacttcatttgattggataagccttggtcagttggttgttgtcgggagaagggtctgtatttagtctataaaagtacttgga 208  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7970435 cgtttgatccatgtagccaactccatttgattggataagccgtggtcagttggttgttgtcgggagaagggtctgtatttagtctataaaagtatttgga 7970336  T
Q  209 acatgattacctccaaaggaaga 231  Q
    |||||||||||||| | ||||||    
T  7970335 acatgattacctccgagggaaga 7970313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 44719462 - 44719398
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||||||||||||||  |||||| ||| | |||||||||||||||||||||||||||||    
T  44719462 ttaatgagttagatagaaatacggtatataatagagcattatggtgtcgtttgatccatgtagcc 44719398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 47372832 - 47372896
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||    
T  47372832 ttaatgagttggatagaaatatggtatattatagaacattatggagtcgtttgatccatgtagcc 47372896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 37042761 - 37042701
Alignment:
Q  66 tgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||| ||||||||||  |||| ||||| |||||||||||||||||||||||||||||||    
T  37042761 tgagttggatagaaatacggtatttgatagaacattatggtgtcgtttgatccatgtagcc 37042701  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 7682011 - 7681948
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||||||||||||||| ||||||||||  ||||||| |  ||||||||||||||||||    
T  7682011 ttaatgagttagatagaaatatggtatatgataggacattattgcatcgtttgatccatgtagc 7681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 8599043 - 8598978
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||||||| |||||||  |||| ||||| |||||||||| |||||||||| |||||||||    
T  8599043 gttaatgagttagaaagaaataaggtatttgatagaacattatggcgtcgtttgattcatgtagcc 8598978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 29209276 - 29209212
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||||||||||| |||||||||| | |||||||| || |||||||| ||||||||    
T  29209276 ttaatgagttggatagaaatatggtatatgatagagcattatggcgttgtttgatcaatgtagcc 29209212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 41192242 - 41192306
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||||||||||| ||||||| || ||||||||||  ||||| |||||||||||||    
T  41192242 ttaatgagttggatagaaatatggtatatggtagaacattatggcttcgttcgatccatgtagcc 41192306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 38903819 - 38903752
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||| |||||| ||||  ||||||| | ||||||||||  ||||||||||||||||||||||    
T  38903819 ttaatgagtttgatagagatatgatatatgacataacattatggcatcgtttgatccatgtagccaac 38903752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 42639121 - 42639054
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||| ||||||||||| |||| ||||| |||||||||| ||||| | || ||||||||||||    
T  42639121 ttaatgagttggatagaaatatggtatttgatagaacattatggcgtcgtgtaattcatgtagccaac 42639054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 2557773 - 2557680
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattat-ggtgtcgtttgatccatgtagccaacttcatttgattggataagccttggt 154  Q
    |||| ||||| ||| ||||||| || ||||||| |||||||| |||||  |||||||||||||||||||| |||||  | ||||||| ||||||    
T  2557773 ttaacgagttggatcgaaatatggtttatgatagaacattattggtgtaatttgatccatgtagccaactccatttagtgggataaggcttggt 2557680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 20105604 - 20105553
Alignment:
Q  77 gaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaa 128  Q
    ||||||| ||||||||||  ||||||||| ||| ||||||||||||||||||    
T  20105604 gaaatatggtatatgataggacattatggcgtcatttgatccatgtagccaa 20105553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 25575005 - 25575068
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| ||| ||||||| || ||||||| |||||| ||||||  |||||||||||||||    
T  25575005 ttaatgagttggatcgaaatatggtttatgatagaacattgtggtgtaatttgatccatgtagc 25575068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 54470388 - 54470455
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||| ||||||||||| ||||||||   | |||||| | ||| |||||||||||||||||||    
T  54470388 ttaatgagttggatagaaatatggtatatgactgagcattattgcgtcatttgatccatgtagccaac 54470455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30298964 - 30298910
Alignment:
Q  5 tcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcat 59  Q
    |||||||||| || ||||| || |||||||||| ||||||| |||||||||||||    
T  30298964 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 30327832 - 30327778
Alignment:
Q  5 tcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcat 59  Q
    |||||||||| || ||||| || |||||||||| ||||||| |||||||||||||    
T  30327832 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 31403135 - 31403073
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    ||||| |||| ||||||||| | |||||||||| | ||||||||||| | |||||||||||||    
T  31403135 ttaattagttggatagaaatgtggtatatgatagagcattatggtgttgcttgatccatgtag 31403073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 32339740 - 32339802
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||| ||||| |||||| ||||  ||||||||| || ||||||| ||||||||||||||||||    
T  32339740 ttaacgagttggatagagatatgatatatgatagaaaattatggcgtcgtttgatccatgtag 32339802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 40018288 - 40018226
Alignment:
Q  64 aatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||| |||||  ||||  ||||||||| ||||||| || ||||||||||||||||||||    
T  40018288 aatgagttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatgtagcc 40018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 55029002 - 55029056
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgat 116  Q
    |||||||| |||||||||||||  ||||||||| |||||||||| ||| ||||||    
T  55029002 ttaatgagctagatagaaatatgttatatgatagaacattatggcgtcatttgat 55029056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 48174168 - 48174131
Alignment:
Q  88 tatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  48174168 tatgataaaacattatggcgtcatttgatccatgtagc 48174131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 44047472 - 44047404
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaa-cattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||| ||||  ||||| ||||||||||| | ||| |||||| |||||||| ||||||||||||    
T  44047472 ttaatgagttggataataatatggtatatgataagagcataatggtgacgtttgattcatgtagccaac 44047404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 55388312 - 55388252
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgt 122  Q
    |||||||||||||| |||||||  | ||||||| |||||| ||||||  ||||||||||||    
T  55388312 ttaatgagttagatcgaaatatgatttatgatagaacattgtggtgtaatttgatccatgt 55388252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 32945429 - 32945493
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  32945429 ttaatgagttagatagaaatattttatatgatagaacattatggtgtcgtttgatccatgtagcc 32945493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 1748046 - 1747984
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||||| |||||||||||||||||||||| ||||||| |  ||||||||||||||||||    
T  1748046 ttaatgagttggatagaaatatagtatatgatagaacattacgacgtcgtttgatccatgtag 1747984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 6293493 - 6293429
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||||||||||||||| |||||||||| | ||||||||   |||||| || ||||||||    
T  6293493 ttaatgagttagatagaaatatggtatatgatagagcattatggcaacgtttggtcaatgtagcc 6293429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 34606 - 34543
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| ||| ||||||| || ||||||| |||||||||| ||  |||||||||||||||    
T  34606 ttaatgagttggattgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagc 34543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 35199723 - 35199681
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatgg 105  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  35199723 ttaatgagttagatagaaatat-gtatatgatagaacattatgg 35199681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 413275 - 413328
Alignment:
Q  73 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||||| |||||||||| || ||||| ||||| ||||||| ||||||||    
T  413275 gatagaaatatggtatatgatagaagattatagtgtcatttgatcaatgtagcc 413328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 3210609 - 3210546
Alignment:
Q  62 ttaatgagttagatagaaatat-agtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| ||| ||||||| ||| ||||||| |||||||||||||  |||||||||||||||    
T  3210609 ttaatgagttggatggaaatatgagt-tatgatagaacattatggtgtaatttgatccatgtagc 3210546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 5053707 - 5053771
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| | ||| ||||| |||||||||||| |||| | | ||||||||||| ||||||||    
T  5053707 ttaatgagttggttaggaatatggtatatgataaagcattgttgcgtcgtttgatcaatgtagcc 5053771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 7267475 - 7267423
Alignment:
Q  73 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||| ||||||  ||||||||  ||||||||| ||||||||||||||||||||    
T  7267475 gataaaaatatgatatatgatgcaacattatgatgtcgtttgatccatgtagc 7267423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 17841630 - 17841686
Alignment:
Q  5 tcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 61  Q
    |||||||||| || ||||| || |||||||||| ||||||| ||| |||||||||||    
T  17841630 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcatag 17841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 55244459 - 55244518
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatg 121  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  55244459 ttaatgagttggatagaaatatggtatatgatagaacattatggtgtcgtttgatccatg 55244518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 41842625 - 41842550
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaacttcattt 136  Q
    ||||||||||||||| ||||||| || | ||||| |||||||||||||  |||||||||||||| |||| ||||||    
T  41842625 gttaatgagttagattgaaatatggtttttgatagaacattatggtgtaatttgatccatgtagtcaacctcattt 41842550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 42026637 - 42026573
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||||||||||||||| |||||||||| |||||||||| ||  |||||| ||| |||||    
T  42026637 ttaatgagttagatagaaatatggtatatgatagaacattatggcgttatttgattcatttagcc 42026573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 11284169 - 11284236
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||| |||| |||||| |||||||||  |||||||| |  ||||||||||||||||||||||    
T  11284169 ttaatgagttggatataaatatggtatatgattgaacattattgcatcgtttgatccatgtagccaac 11284236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 46140588 - 46140650
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||||| |||||||||||||  || |||| |||||||||| || |||||||||||||||    
T  46140588 ttaatgagtttgatagaaatatagcttacgatagaacattatggagttgtttgatccatgtag 46140650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 41971371 - 41971303
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaact 130  Q
    ||||||||||  | ||||||||  ||||||||| |||||||||  || |||||||||||||||||||||    
T  41971371 ttaatgagttgtacagaaatatgatatatgatagaacattatgacgttgtttgatccatgtagccaact 41971303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 29601073 - 29601136
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| |||  ||||||||| ||||||| ||||||||| |||  |||||||||||||||    
T  29601073 ttaatgagttggattcaaatatagtttatgatagaacattatgatgtaatttgatccatgtagc 29601136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 49841797 - 49841860
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| ||| ||||||| |||||||||| ||||||||||  |  |||||||||||||||    
T  49841797 ttaatgagttggatcgaaatatggtatatgatagaacattatggcataatttgatccatgtagc 49841860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 33359779 - 33359738
Alignment:
Q  5 tcaaattattggcggtgtcagcatgtcagtgtctgtgtccgg 46  Q
    |||||||||| || |||||||| |||||||||||||||||||    
T  33359779 tcaaattattagctgtgtcagcgtgtcagtgtctgtgtccgg 33359738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 39535477 - 39535440
Alignment:
Q  86 tatatgataaaacattatggtgtcgtttgatccatgta 123  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  39535477 tatatgatagaacattatggtggcgtttgatccatgta 39535440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6525717 - 6525773
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttc 57  Q
    |||||||||||||| ||||||||  |||||||||||  ||||||| ||| |||||||    
T  6525717 tttctcaaattattagcggtgtcgacatgtcagtgtacgtgtccgtatccgtgcttc 6525773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 36515044 - 36515012
Alignment:
Q  31 cagtgtctgtgtccggatctgtgcttcatagtt 63  Q
    ||||||||||||||| |||||||||||||||||    
T  36515044 cagtgtctgtgtccgtatctgtgcttcatagtt 36515012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 46367464 - 46367424
Alignment:
Q  86 tatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
T  46367464 tatatgatagaacattatgacgtcgtttgatccatgtagcc 46367424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 50237731 - 50237671
Alignment:
Q  66 tgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||| ||||||||||| |||||||||| |||||||  |   ||||||||||||||||||    
T  50237731 tgagttggatagaaatattgtatatgatagaacattactgctccgtttgatccatgtagcc 50237671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 6807388 - 6807447
Alignment:
Q  65 atgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    ||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||    
T  6807388 atgagttagatagaaatatggtgtatgatagaacattatggcgtcgtttgatccatgtag 6807447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 22174181 - 22174245
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||| |||||||||||||| |||| ||||| |||||||||| || |||||||||||||||||    
T  22174181 ttaatgaattagatagaaatatggtatgtgatagaacattatggcgttgtttgatccatgtagcc 22174245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25791675 - 25791616
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcata 60  Q
    |||||||||| ||| |||||||| || |||||||||||||||||| ||| ||||||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagtgtctgtgtccgtatccgtgcttcata 25791616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 21078124 - 21078190
Alignment:
Q  88 tatgataaaacattatggtgtcgtttgatccatgtagccaacttcatttgattggataagccttggt 154  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||||||  | ||||||| ||||||    
T  21078124 tatgatagaacattatggcgtcatttgatccatgtagccgacttcatttagtgggataaggcttggt 21078190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 3629557 - 3629623
Alignment:
Q  63 taatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||| |||||||||||||||| |||||||||| | |||||| |  || ||||||| |||||||||||    
T  3629557 taattagttagatagaaatatggtatatgatagagcattattgcatcttttgatcgatgtagccaac 3629623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 39812144 - 39812181
Alignment:
Q  87 atatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  39812144 atatgatagaacattatgatgtcgtttgatccatgtag 39812181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 9210806 - 9210742
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    ||||||||||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||    
T  9210806 gttaatgagttggatccaaatatggtttatgatacaacattatggcgtaatttgatccatgtagc 9210742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 12966197 - 12966261
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||| || ||||||||||| |||||||||||| |||||||   | ||||||| |||||||||    
T  12966197 ttaatgatttggatagaaatatggtatatgataaatcattatgccattgtttgattcatgtagcc 12966261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 14057658 - 14057726
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||| ||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||||||    
T  14057658 gttaatgcgttcgattcaaatatggtttatgatagaacattatggggtaatttgatccatgtagccaac 14057726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 14367686 - 14367754
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||| ||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||||||    
T  14367686 gttaatgcgttcgattcaaatatggtttatgatagaacattatggggtaatttgatccatgtagccaac 14367754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21139030 - 21139090
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 61  Q
    ||||||||||||||  ||||||   |||||||||||||||||| | ||| |||||||||||    
T  21139030 tttctcaaattattaacggtgttgacatgtcagtgtctgtgtctgtatccgtgcttcatag 21139090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32308142 - 32308082
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 61  Q
    |||||||||||||| |||||||| || ||||||||||  ||| || || ||||||||||||    
T  32308142 tttctcaaattattagcggtgtcggcgtgtcagtgtccatgttcgtatttgtgcttcatag 32308082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 36245350 - 36245295
Alignment:
Q  68 agttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||||||| ||| |||||||||| |||||||||  ||||||||||||| ||||    
T  36245350 agttagatagaa-tatggtatatgatagaacattatgacgtcgtttgatccacgtag 36245295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 17815663 - 17815722
Alignment:
Q  65 atgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    ||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||||    
T  17815663 atgagttagatagaaatatggtatatgatagagcattttggtgtcgtttgatccatgtag 17815722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 38869063 - 38869127
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||| ||| |||||| |||| |||||||||| |||||||||| ||||||||||||||||||||    
T  38869063 ttaatgggttggatagatatatggtatatgatagaacattatggcgtcgtttgatccatgtagcc 38869127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 7124322 - 7124385
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    ||||||| || ||||||||||| ||||| |||| | ||||||||||||||||||||||||||||    
T  7124322 ttaatgaattggatagaaatatggtataggatagagcattatggtgtcgtttgatccatgtagc 7124385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 40920630 - 40920568
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||||| ||||||||||| |||||||||| || ||||||||||| |||||| |||||||    
T  40920630 ttaatgagttggatagaaatatggtatatgatagaatattatggtgtcttttgattcatgtag 40920568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 6025786 - 6025850
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||||||||||| |||| ||||| ||||| |||| ||| ||||||||||||||||    
T  6025786 ttaatgagttggatagaaatatggtatctgatagaacatgatggcgtcatttgatccatgtagcc 6025850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 38877444 - 38877380
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||| ||||| |||||  |||||||||| |||| |||||||||| ||| ||||||||||||||||    
T  38877444 ttaacgagttggatagggatatagtatacgatagaacattatggcgtcatttgatccatgtagcc 38877380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 42501289 - 42501353
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||||||||||| | |||||||| |||||||  | ||||||| ||||||||||||    
T  42501289 ttaatgagttggatagaaatatggaatatgatagaacattacagcgtcgtttaatccatgtagcc 42501353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 14225912 - 14225873
Alignment:
Q  87 atatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  14225912 atatgatagaacagtatggtgtcgtttgatccatgtagcc 14225873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 15577599 - 15577666
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||| |||||| ||||  ||| ||||| |||||||| |||| |||||||||||||| |||||    
T  15577599 ttaatgagttggatagagatatgatatttgatagaacattattgtgttgtttgatccatgtacccaac 15577666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 30396806 - 30396763
Alignment:
Q  86 tatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  30396806 tatatgatagaacattatggtggcgtttgatccgtgtagccaac 30396763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 50257767 - 50257818
Alignment:
Q  78 aaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||| || ||||||| |||||||||||||  |||||||||||||||||||    
T  50257767 aaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaac 50257818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 13827681 - 13827639
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatg 104  Q
    |||||||||| ||||||||||| |||||||||| |||||||||    
T  13827681 ttaatgagttggatagaaatatggtatatgatagaacattatg 13827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 25460220 - 25460162
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccat 120  Q
    |||||||||| ||||||||||| |||||| ||| ||||| | ||||| |||||||||||    
T  25460220 ttaatgagtttgatagaaatatggtatataatagaacatcacggtgttgtttgatccat 25460162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9690309 - 9690354
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccgg 46  Q
    |||||||  ||||| ||||||||||| |||||||||||||||||||    
T  9690309 tttctcagtttattagcggtgtcagcgtgtcagtgtctgtgtccgg 9690354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 10569161 - 10569108
Alignment:
Q  73 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||||| |||||||||| ||||||||  | || ||||||||||||||||    
T  10569161 gatagaaatatcgtatatgatagaacattataatatcatttgatccatgtagcc 10569108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 30017153 - 30017092
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 123  Q
    ||||||||||||||||| |||   |||  || | ||||||||||||||||||||||||||||    
T  30017153 ttaatgagttagatagagataccatatccgacagaacattatggtgtcgtttgatccatgta 30017092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 109094 - 109030
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||| | ||||  | ||||||| |||||||||| ||| ||||||||||||||||    
T  109094 ttaatgagttggataaatatatgatgtatgatagaacattatggcgtcatttgatccatgtagcc 109030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 2545176 - 2545136
Alignment:
Q  86 tatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||| |||||||||||||||||||||| || |||||    
T  2545176 tatatgatagaacattatggtgtcgtttgatcaatttagcc 2545136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 17267831 - 17267799
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgata 94  Q
    |||||||||||||||||||||| ||||||||||    
T  17267831 ttaatgagttagatagaaatatggtatatgata 17267799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 17275366 - 17275398
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgata 94  Q
    |||||||||||||||||||||| ||||||||||    
T  17275366 ttaatgagttagatagaaatatggtatatgata 17275398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 24596767 - 24596827
Alignment:
Q  63 taatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 123  Q
    ||||||||| ||||||| ||  |||||||||| ||||| ||| |||||||||||| |||||    
T  24596767 taatgagttcgatagaattaatgtatatgatataacataatgatgtcgtttgatctatgta 24596827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 27072588 - 27072524
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||| ||||| || |||||||| || ||||||| |||||||||| ||  ||||||||||||||||    
T  27072588 ttaaagagttggacagaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 27072524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 34444537 - 34444601
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||  |||||| || ||| |||||||||||||||||  ||||||| ||||||||    
T  34444537 ttaatgagttggatccaaatatggtttataataaaacattatggtgtaatttgatctatgtagcc 34444601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36878483 - 36878439
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccg 45  Q
    |||||||||||||| |||||||| || ||||||||||| ||||||    
T  36878483 tttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccg 36878439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 48865809 - 48865741
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||| ||||||  | |||| || ||||||| || ||||||||||  |||||||||||||||||||    
T  48865809 gttaatgaattagatccagatatggtttatgatagaatattatggtgtaatttgatccatgtagccaac 48865741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 8197642 - 8197578
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||||||||||  ||||||||| || ||||||| ||||||||||||||||||||    
T  8197642 ttaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagcc 8197578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 8202402 - 8202338
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||||||||||  ||||||||| || ||||||| ||||||||||||||||||||    
T  8202402 ttaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagcc 8202338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 37470234 - 37470171
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| ||| ||||||| | |||||||| ||||||||||||| ||||||||||||||||    
T  37470234 ttaatgagttggatcgaaatatggcatatgatagaacattatggtgtagtttgatccatgtagc 37470171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 26784441 - 26784375
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaa 128  Q
    ||||||||||  |||||||||| ||||||||||||||||| |||| |  ||||||||||||||||||    
T  26784441 ttaatgagttgaatagaaatatggtatatgataaaacattttggtttaatttgatccatgtagccaa 26784375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 16626053 - 16626002
Alignment:
Q  74 atagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| |||| ||||| ||| ||||||||||||||||||||||||||    
T  16626053 atagaaatatggtatttgatagaacgttatggtgtcgtttgatccatgtagc 16626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 19336994 - 19336928
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaa 128  Q
    |||||||||| ||| ||||||| || ||||||| |||||||||| ||  ||||||||||||||||||    
T  19336994 ttaatgagttggatcgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaa 19336928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 32402681 - 32402743
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||||| ||||||||||  |||||||||| ||||||||||| || ||||||||| ||||    
T  32402681 ttaatgagttggatagaaataaggtatatgatagaacattatggtttcatttgatccacgtag 32402743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 6219161 - 6219213
Alignment:
Q  77 gaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||| || ||||||| |||||||||||||  |||||||||||||||||||    
T  6219161 gaaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaac 6219213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 9496046 - 9496114
Alignment:
Q  61 gttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||||||| |||  |||||| || ||||||| |||||||||| ||  |||||||||||||||||||    
T  9496046 gttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaac 9496114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 19235085 - 19235017
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaact 130  Q
    ||||||| || ||||||||||| |||| ||||| |||||| ||  ||||||| ||||||||||||||||    
T  19235085 ttaatgatttggatagaaatatggtatttgatagaacattctgtcgtcgtttaatccatgtagccaact 19235017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 33287602 - 33287670
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaact 130  Q
    |||||||||||||| ||||||| || ||||||| |||||||||   | ||||||||| |||||||||||    
T  33287602 ttaatgagttagatcgaaatatggtttatgatagaacattatgacatagtttgatccttgtagccaact 33287670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37411281 - 37411323
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtc 43  Q
    |||||||||||||| |||||||| ||||||||| |||||||||    
T  37411281 tttctcaaattattagcggtgtcggcatgtcagcgtctgtgtc 37411323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 8187299 - 8187352
Alignment:
Q  73 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||| ||| |||| | ||| ||||||||||||| |||||||||||||||||    
T  8187299 gatagaagtatggtatttaatacaacattatggtgttgtttgatccatgtagcc 8187352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 29159286 - 29159335
Alignment:
Q  74 atagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 123  Q
    ||||||||||  ||| |||||||| ||||||| |||||||||||||||||    
T  29159286 atagaaatatgatatttgataaaatattatggcgtcgtttgatccatgta 29159335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 19224986 - 19225026
Alignment:
Q  86 tatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||| |||| |||| |||||||||||||||||||||    
T  19224986 tatatgatagaacactatgatgtcgtttgatccatgtagcc 19225026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 23492215 - 23492279
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||||||||||  ||||||||| |||| ||||||||| ||| ||||||||||||    
T  23492215 ttaatgagttggatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagcc 23492279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 11733928 - 11733986
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccat 120  Q
    |||||||||||||||||||||| |||| ||||| | |||||||| ||||||||| ||||    
T  11733928 ttaatgagttagatagaaatatggtatgtgatagagcattatggcgtcgtttgaaccat 11733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 12611680 - 12611742
Alignment:
Q  64 aatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||| | |||||||||  |||||| || ||| |||||||||||||||||||||||||||    
T  12611680 aatgagttgggtagaaatatgatatatgttagaactttatggtgtcgtttgatccatgtagcc 12611742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 3638434 - 3638390
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggt 106  Q
    |||||||||| || ||||||||||||||||||| |||||||||||    
T  3638434 ttaatgagttggacagaaatatagtatatgatagaacattatggt 3638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 39967600 - 39967536
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||| || ||||||| |||| || |||||||||| || |||||||||||||||||    
T  39967600 ttaatgagttggattgagatatagtttatgttagaacattatggcgtagtttgatccatgtagcc 39967536  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 30748644 - 30748707
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagc 125  Q
    |||||||||| |||||||||||  ||||| ||  ||||||||| |||| |||||||||||||||    
T  30748644 ttaatgagttggatagaaatatgatatataattgaacattatgatgtcatttgatccatgtagc 30748707  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 26642708 - 26642745
Alignment:
Q  87 atatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||| | |||||||||||||||||||||||||||    
T  26642708 atatgatagatcattatggtgtcgtttgatccatgtag 26642745  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 14459076 - 14459140
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||||||   |||||| || ||||||  |||||||||||||  ||||||||||||||||    
T  14459076 ttaatgagttagaccaaaatatggtttatgatggaacattatggtgtaatttgatccatgtagcc 14459140  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 26639232 - 26639268
Alignment:
Q  87 atatgataaaacattatggtgtcgtttgatccatgta 123  Q
    |||||||| | ||||||||||||||||||||||||||    
T  26639232 atatgatagatcattatggtgtcgtttgatccatgta 26639268  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 27480168 - 27480204
Alignment:
Q  88 tatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  27480168 tatgatagaacattatggtgtagtttgatccatgtag 27480204  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 29520830 - 29520894
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||  |||||| || ||||||| |||||||||| ||  ||||||||||||||||    
T  29520830 ttaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 29520894  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 30783143 - 30783079
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||| ||||||  || ||| |||||||||||||  || |||||||||||||||||    
T  30783143 ttaatgagttggatcgaaatacggtttataataaaacattatgaggtagtttgatccatgtagcc 30783079  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31109555 - 31109615
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 61  Q
    ||||||||||||||  ||||||| || |||||||||| ||||||  ||| |||||||||||    
T  31109555 tttctcaaattattaacggtgtcggcgtgtcagtgtccgtgtccatatcagtgcttcatag 31109615  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 33118234 - 33118206
Alignment:
Q  101 tatggtgtcgtttgatccatgtagccaac 129  Q
    |||||||||||||||||||||||||||||    
T  33118234 tatggtgtcgtttgatccatgtagccaac 33118206  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 43904766 - 43904702
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| |||  |||||| || ||||||| |||||||||| ||  ||||||||||||||||    
T  43904766 ttaatgagttggatctaaatatggtttatgatagaacattatggcgtaatttgatccatgtagcc 43904702  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 4026429 - 4026365
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||| ||| ||||| |||||||||||  |||||||||||||  ||||||||||||||||||||    
T  4026429 ttaatgggtttgataggaatatagtatacaataaaacattatgacgtcgtttgatccatgtagcc 4026365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 18351003 - 18350939
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||||| ||||||||||| |||| || || |||||||||  ||||||||||||||||||||    
T  18351003 ttaatgagttggatagaaatatggtatttgttagaacattatgacgtcgtttgatccatgtagcc 18350939  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 38657050 - 38657095
Alignment:
Q  88 tatgataaaacattatggtgtcgtttgatccatgtagccaacttca 133  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  38657050 tatgatagaacattatgatgtcgtttgattcatgtagccaacttca 38657095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 2645175 - 2645235
Alignment:
Q  66 tgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||| ||||||||| | |||| |||||||||||||| |  |||||||||||||||||||    
T  2645175 tgagttggatagaaatgtggtatttgataaaacattatagcatcgtttgatccatgtagcc 2645235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 12576961 - 12576897
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    ||||||||||  |||||||||| |||||||||| | |||||||||||| ||| || |||||||||    
T  12576961 ttaatgagttgaatagaaatatggtatatgatagaccattatggtgtcattttatacatgtagcc 12576897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 683786 - 683735
Alignment:
Q  78 aaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||||| || ||||||| ||||||||| ||| ||||||||||||||||||||    
T  683786 aaatatggtttatgatagaacattatgttgtagtttgatccatgtagccaac 683735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 29922494 - 29922557
Alignment:
Q  91 gataaaacattatggtgtcgtttgatccatgtagccaacttcatttgattggataagccttggt 154  Q
    |||| |||||||||| ||  ||||||||||||||||||| ||| ||| | ||||||||||||||    
T  29922494 gatagaacattatggcgtaatttgatccatgtagccaacctcacttggtgggataagccttggt 29922557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 15588489 - 15588427
Alignment:
Q  64 aatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 126  Q
    |||||||| |||| ||| || |||||||| | |||||||||| ||||||||||| ||||||||    
T  15588489 aatgagttggataaaaacatggtatatgacagaacattatggcgtcgtttgatctatgtagcc 15588427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 27998622 - 27998683
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgta 123  Q
    |||||||||||||||| || ||  ||||||||| || ||||||  |||||||||||||||||    
T  27998622 ttaatgagttagataggaacatgatatatgatagaatattatgacgtcgtttgatccatgta 27998683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 36123259 - 36123222
Alignment:
Q  86 tatatgataaaacattatggtgtcgtttgatccatgta 123  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  36123259 tatatgatagaacattatggtggcgtttgatccatgta 36123222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 41894280 - 41894321
Alignment:
Q  88 tatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||| |||||||||||||  |||||||||||||||||||    
T  41894280 tatgatacaacattatggtgtaatttgatccatgtagccaac 41894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3966525 - 3966489
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtc 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  3966525 tttctcaaattattagcggtgtcggcatgtcagtgtc 3966489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 6035505 - 6035445
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 61  Q
    |||||||||||||| |||||||| || ||||||||||| ||||   ||| |||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagtgtctttgtctatatccgtgcttcatag 6035445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11685961 - 11685925
Alignment:
Q  1 tttctcaaattattggcggtgtcagcatgtcagtgtc 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  11685961 tttctcaaattattagcggtgtcggcatgtcagtgtc 11685925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 27144482 - 27144442
Alignment:
Q  4 ctcaaattattggcggtgtcagcatgtcagtgtctgtgtcc 44  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  27144482 ctcaaattattagcggtgtcggcgtgtcagtgtctgtgtcc 27144442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 43001818 - 43001762
Alignment:
Q  5 tcaaattattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 61  Q
    |||||||||| || |||||  |||||||||||| ||||||| ||| |||||||||||    
T  43001818 tcaaattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcatag 43001762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 25544 - 25482
Alignment:
Q  62 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtag 124  Q
    |||||||||| ||||||||||   ||||||||||||||||||||  |||||||||| ||||||    
T  25544 ttaatgagttggatagaaataagttatatgataaaacattatggcttcgtttgatctatgtag 25482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 6862 - 6806
Alignment:
Q  73 gatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    ||||||||||| |||||||||| ||||||||||  |  |||||||||||||||||||    
T  6862 gatagaaatatggtatatgatataacattatggcataatttgatccatgtagccaac 6806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 16528 - 16462
Alignment:
Q  63 taatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagccaac 129  Q
    |||| |||||||||||||||| |||||||||| | |||||| |  || ||||||| |||||||||||    
T  16528 taattagttagatagaaatatggtatatgatagagcattattgcatcttttgatcgatgtagccaac 16462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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