View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_23 (Length: 224)
Name: NF17709_low_23
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 21572028 - 21571874
Alignment:
| Q |
57 |
agcaacatactaagattacttctattgtaagaaaagagtggtttgatttgatacctgaagagaatcaccgacattaacaaagaaggaattgtgatcagaa |
156 |
Q |
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| T |
21572028 |
agcagcatactaagattacttctattgtaagaaaagagtggtttgatttgatacctgaagagaatcaccgacattaacaaagaaggaattgtgatcagaa |
21571929 |
T |
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| Q |
157 |
gggactgaaatccaactcttatctttgagacgaatttgaagaccagaagtattat |
211 |
Q |
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| T |
21571928 |
gggactgaaatccaactcttatctttgagacgaatttgaagaccagaagtgttat |
21571874 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 29877252 - 29877318
Alignment:
| Q |
107 |
atacctgaagagaatcaccgacattaacaaagaaggaattgtgatcagaagggactgaaatccaact |
173 |
Q |
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| T |
29877252 |
atacctgaagagaatcaccaacattgatgaagaaggatctatgatcaggtgggactgaaatccaact |
29877318 |
T |
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