View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_3 (Length: 424)
Name: NF17709_low_3
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 376433 - 376832
Alignment:
| Q |
7 |
tagattatacttttcttggcatgttaccatcactcctttggaacttgtggaatattcatgatttcttagctgcgttattgaagcaacatagaggtagtgg |
106 |
Q |
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| T |
376433 |
tagattatacttttcttggcatgttaccatcactcctttggaacttgtggaatattcatgatttcttagctgcgttattgaagcaacatagaggtagtgg |
376532 |
T |
|
| Q |
107 |
tgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
376533 |
tgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgtg |
376632 |
T |
|
| Q |
207 |
aagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactcta |
306 |
Q |
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| T |
376633 |
aagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactcta |
376732 |
T |
|
| Q |
307 |
ttttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaagg |
406 |
Q |
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| T |
376733 |
tttttaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaagg |
376832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 106 - 406
Target Start/End: Complemental strand, 347964 - 347664
Alignment:
| Q |
106 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
205 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||| | ||||||||||| ||||| ||||||||||| ||||||||| ||||||| |||||||| |
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| T |
347964 |
gtgagttcatgggaccttggtttaccaacatgaactatttggttactagtgaccctatgaacgtgcatcacatgatgagcaagtgttttgataattatgt |
347865 |
T |
|
| Q |
206 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
305 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||| |
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| T |
347864 |
aaagggtcaagaatttcatgagatttttgaagcctttggagatggaatattcaacgctgattcggagaaatggaaatacaataggtctctttttcactct |
347765 |
T |
|
| Q |
306 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaag |
405 |
Q |
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| T |
347764 |
attttcaaacaaagagattttgaattgtttcaaaagaaaatcattcaaaacaagttggagagaagtttgattcctttgtttgaccatgtacaacaacaag |
347665 |
T |
|
| Q |
406 |
g |
406 |
Q |
| |
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| |
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|
| T |
347664 |
g |
347664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 106 - 406
Target Start/End: Complemental strand, 356623 - 356323
Alignment:
| Q |
106 |
gtgagttcatgggaccttggtttaccaaaatgaattatttcatcactagtgaccccatgaatgtgcatcacataatgagcaagcgttttgacaattatgt |
205 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||||| | |||||| ||||||||||||||| |
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| T |
356623 |
gtgagttcatgggaccttggtttaccagcatgaactatttggtcactagtgaccccatcaacttgcatcacatgttaagcaagtcttttgacaattatgt |
356524 |
T |
|
| Q |
206 |
gaagggtcatgaatttcatgagatatttgaagcctttggagatggaatattcaacgctgattcaaagacatggaaatataataggtctcttcttcactct |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||| |
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| T |
356523 |
taagggtcatgaatatcatgagatatttgaagcctttggagatggaatattcaacactgattcggagacatggaaatacaataggtctctttttcactct |
356424 |
T |
|
| Q |
306 |
attttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttgattcctttgttggaccatgtacaacaacaag |
405 |
Q |
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| T |
356423 |
attttgaaaataagagattttgaaatgtttcaaaagaaaatcattcaaaacaagttggagaaaagtttgattcctttgttggaccatgtacaacaacaag |
356324 |
T |
|
| Q |
406 |
g |
406 |
Q |
| |
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| |
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|
| T |
356323 |
g |
356323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 336917 - 337046
Alignment:
| Q |
275 |
atggaaatataataggtctcttcttcactctattttcaaacaaagaagctttgaattgtttcaagagaaaatcattcaaaacaagttggagagaagtttg |
374 |
Q |
| |
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||||||||| |||||| |||||| || | | | ||||||||||||||||||||| |||||||||||||||||||| ||||| | |||| | ||| |
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| T |
336917 |
atggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaatcattcacaacaaagttgagaaatcattg |
337016 |
T |
|
| Q |
375 |
attcctttgttggaccatgtacaacaacaa |
404 |
Q |
| |
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|||||||| ||| | ||||| ||||||||| |
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|
| T |
337017 |
attcctttattgaatcatgttcaacaacaa |
337046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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