View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_4 (Length: 411)
Name: NF17709_low_4
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 30942483 - 30942822
Alignment:
| Q |
18 |
atattgaattttaggacttgaatccactctagcacgctagctaggttgagcttcatatcatagcttgatacagaatactagaatagttaagttccttgtt |
117 |
Q |
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| T |
30942483 |
atattgaattttaggacttgaatccactctagcacgctagctaggttgagcttcatatcatagcttgatacagaatactagaatagttaagttccttgtt |
30942582 |
T |
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| Q |
118 |
caaaaattgtattttggttagaatgatacctgttgtttgtcgcgttttgttccattgatttaatattactatgcaaatttttaactaagttatgttagtt |
217 |
Q |
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| T |
30942583 |
caaaaattgtattttggttagaatgatacctgttgtttgtcgtgttttgttccattga-----------tatctaaatttttaattaagttatgttagtt |
30942671 |
T |
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| Q |
218 |
tagtttacatatcagtattcctcatagtcatagctcttcttaattgaagatgcaggttattttttgagctttattacatacaattaggaagtttgctgaa |
317 |
Q |
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| T |
30942672 |
t-------atatcagtattcctcatagtcatagctcttcttaattgaagatgcaggttattttttgagctttattacatacaattaggaagtttgttgaa |
30942764 |
T |
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| Q |
318 |
ctacgaatcaacatttctatcatgcaggttattttttgagttttattacatacaattagg |
377 |
Q |
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| T |
30942765 |
ctacgaatcaacatttctatcatgcaggtta--ttttgagttttattacatacaattagg |
30942822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 31010572 - 31010620
Alignment:
| Q |
96 |
tagaatagttaagttccttgttcaaaaattgtattttggttagaatgata |
145 |
Q |
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| T |
31010572 |
tagaatagttaagttgcgtgttcaaaagt-gtattttggttagaatgata |
31010620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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