View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_5 (Length: 389)
Name: NF17709_low_5
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Complemental strand, 35782526 - 35782158
Alignment:
| Q |
5 |
ttttactggcagctagatcccacaaaatacaaccatattcttcccacacatcctcaccaaccgaagcaccaaaacgttcaactccatcacccgtatcctg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35782526 |
ttttactggcagctagatcccacaaaatacaaccatattcttcccatgcatcctcaccaaccgaagcaccaaaacgttcaactccatcacccgtatcctg |
35782427 |
T |
|
| Q |
105 |
acattctcctcgtgtgtgagaagattcacaggaaacatcaacatccatattttcagatgtactcttagataactcgatgtgttcattgttacaaattgat |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35782426 |
acattctcctcgcgtgtgagaagattcacaggaaacatcaacatccatattttcagatgtactcttagataactcgatgtgttcattgttacaaattgat |
35782327 |
T |
|
| Q |
205 |
gcagatggtgcttccacttctttatcgtctgtaaccgatcctcggttagggtcatccgaaacaacttggttaaccaaggcggaatccaaaggtaatagct |
304 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
35782326 |
gcagatggtgcttcctcttctttatcgtctgtaatcgatcctcggttagggtcatccgaaacaacttggttaaccgaggaggaatccaaaggtaatagct |
35782227 |
T |
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| Q |
305 |
tccttatcaaggatattatataactaggatcaacagttgttgataaatcaaaaaactgcatcatgaata |
373 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35782226 |
tccttatcaaggagattatataactaggatcaacagttgttgataaatcaaaaaactgcatcatgaata |
35782158 |
T |
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