View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_8 (Length: 340)
Name: NF17709_low_8
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 10 - 321
Target Start/End: Original strand, 52055589 - 52055900
Alignment:
| Q |
10 |
aagaaaatagggttattaattattggccattcagcccaacaaaatacacatcaacacagccaaaagatgtggtcaaagtgggtccaaagtgagcgagatt |
109 |
Q |
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| T |
52055589 |
aagaaaatagggttattaattattggccattcagcccaacaaaatacacatcaacacagccaaaagatgtggtcaaagtgggtccaaagtgagtgagatt |
52055688 |
T |
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| Q |
110 |
ttaaatcatactctgagatatagtatatctttttactttaattgaaagatcatatcctttagactttgctaacgattttgctagcataaactctttttct |
209 |
Q |
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| T |
52055689 |
ttaaatcatactctgagatatagtatatctttttactttaattgaaagatcatatcctttagactttgctaacaattttgctagcataaactctttttct |
52055788 |
T |
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| Q |
210 |
taaaactttattataaagatgtcaatgtcattcagagaaatatatatgatagtataggaaataatttgtaccctctgactcaggccatgtaatgcaataa |
309 |
Q |
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| T |
52055789 |
taaaactttattataaagatgtcaatgtcattcagagaaatatatatgatagtataggaaataatttgtatcctctgactcaggccatgtaatgcaataa |
52055888 |
T |
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| Q |
310 |
agaagtgtcact |
321 |
Q |
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|||||||||||| |
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| T |
52055889 |
agaagtgtcact |
52055900 |
T |
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