View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17709_low_9 (Length: 337)
Name: NF17709_low_9
Description: NF17709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17709_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 331
Target Start/End: Original strand, 47452503 - 47452845
Alignment:
| Q |
10 |
aagaatataatgcgagctgtcacgtacttttgttacaaaacagtaacaagagaataatttggtttcgtttgttactaaacagtaacaagaattgataatg |
109 |
Q |
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| T |
47452503 |
aagaaaataatgcgagctgtcacgtacttttgttacaaaacagtaacaagagaataatttggtttcgtttgttactaaacagtaacaagaattgataatg |
47452602 |
T |
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| Q |
110 |
ataagnnnnnnnnnnnnnnncttattgtcatttacgtgatagttttttgaagaggcatttacgtgttagtcagtgtctttcgaacagtaaaaagaattgc |
209 |
Q |
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| T |
47452603 |
ataagtttttttaaaaaaaacttattgtcatttacgtgatagttttttgaagaggcatttacgtgatagttagtgtctttcgaacagtaaaaagaattgc |
47452702 |
T |
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| Q |
210 |
cataagaatttagaatactaaaccgtaagaatttatggcatattgggtatacatagtcccaag---------------------ttagcatactaaacag |
288 |
Q |
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| T |
47452703 |
cataggaatttagaatactaaaccgtaagaatttatggcatattgggtatacatagtcccaagttagcatgctccaagaatttattagcatactaaacag |
47452802 |
T |
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| Q |
289 |
aatttagaatttccatttttccttgatgtactgcgaaggtttg |
331 |
Q |
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| T |
47452803 |
aatttagaatttccatttttccttgatgtagtgcgaaggtttg |
47452845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 13314590 - 13314678
Alignment:
| Q |
18 |
aatgcgagctgtcacgtacttttgttacaaaacagtaacaagagaataatttggtttcgtttgttactaaacagtaacaagaattgata |
106 |
Q |
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| T |
13314590 |
aatgtgagctgtcaagtactcttgttacaaaatagtaacaagaaaataaattggttttgtcttttaccaaacagtaacaagaattgata |
13314678 |
T |
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