View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1770_high_1 (Length: 507)
Name: NF1770_high_1
Description: NF1770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1770_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Complemental strand, 3066927 - 3066448
Alignment:
| Q |
13 |
aaaattcagattggattctacttcaatgtttaatcttgtttagnnnnnnntatatatatctgaannnnnnncactgtgtaaagtccactttagaagaaca |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3066927 |
aaaattcagattggattctacttcaatgtttaatcttgtttagaaaaaaatatatatatctgaatttttttcactgtgtaaagtccactttagaagaaca |
3066828 |
T |
|
| Q |
113 |
caaatacatgtcaaaattgtaatatattttaattttctatgaaaagggaagtgtatcatacgtttgttatctccaaactccaaagtataccaacttgtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3066827 |
caaatacatgtcaaaattgtaatatattttaattttctatgaaaagggaagtgtatcatacgtttgttatctccaaactccaaagtataccaacttgtgt |
3066728 |
T |
|
| Q |
213 |
gttggttaattggtttagtatgagttgaccaagtctacacaaggatacaaaaatgactagtgactaagtgctttaattttgatggcacaaacaatatcta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3066727 |
gttggttaattggtttagtatgagttgaccaagtctacacaaggatacaaaaatgactagtgactaagtgctttaattttgatggcacaaacaatatcta |
3066628 |
T |
|
| Q |
313 |
cttactatgaatcatatggaccgaattgcttctataatctaaacaggttctataatctaaacactgttgtaggtagctcaaaccaaaagtactatagcca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3066627 |
cttactatgaatcatatggaccgaattgcttctataatctaaacaggttctataatctaaacactgttgtaggtagctcaaaccaaaagtactatagcca |
3066528 |
T |
|
| Q |
413 |
ttggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttaggttttctt |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3066527 |
ttggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttaggttttctt |
3066448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 385 - 492
Target Start/End: Complemental strand, 3064518 - 3064411
Alignment:
| Q |
385 |
gtagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttag |
484 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||| | |
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| T |
3064518 |
gtagctcaaaccaaaagtaccatagtcattggtgattcttttactgcacaaaccagtacctctccatggttgctttcaccttctggtgactttgcctttg |
3064419 |
T |
|
| Q |
485 |
gttttctt |
492 |
Q |
| |
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|||||||| |
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| T |
3064418 |
gttttctt |
3064411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 385 - 492
Target Start/End: Original strand, 3033920 - 3034027
Alignment:
| Q |
385 |
gtagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttag |
484 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||| ||||||| |||||||||||||||||||| |||| | |
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| T |
3033920 |
gtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcctttg |
3034019 |
T |
|
| Q |
485 |
gttttctt |
492 |
Q |
| |
|
|||||||| |
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|
| T |
3034020 |
gttttctt |
3034027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 385 - 492
Target Start/End: Original strand, 3041960 - 3042067
Alignment:
| Q |
385 |
gtagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttag |
484 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| | |||| || |||| ||||||| |||||||||||||||||||| |||| | |
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| T |
3041960 |
gtagctcaaaccaatagtactatagccattggtgattcttttactgctgacaccagcaactctacatggttactttcaccttctggtgactttgcctttg |
3042059 |
T |
|
| Q |
485 |
gttttctt |
492 |
Q |
| |
|
|||||||| |
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|
| T |
3042060 |
gttttctt |
3042067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 386 - 492
Target Start/End: Original strand, 3054783 - 3054889
Alignment:
| Q |
386 |
tagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttagg |
485 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||| | || |||| |||||||| |||| ||||||||||||||| |||| || |
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| T |
3054783 |
tagctcaaaccaaaaacactatagccattggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcctttgg |
3054882 |
T |
|
| Q |
486 |
ttttctt |
492 |
Q |
| |
|
||||||| |
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|
| T |
3054883 |
ttttctt |
3054889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 492
Target Start/End: Complemental strand, 3072213 - 3072106
Alignment:
| Q |
385 |
gtagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttag |
484 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| | || | || |||||||||||||| |||||||| |||||||||||||||||||| |||| | |
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| T |
3072213 |
gtagctcaaaccaaaagtaccatagcagctggtgattttcatatttcagaaaccaacacctctccatggttgctttcaccttctggtgactttgcctttg |
3072114 |
T |
|
| Q |
485 |
gttttctt |
492 |
Q |
| |
|
|||||||| |
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|
| T |
3072113 |
gttttctt |
3072106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 3053657 - 3053727
Alignment:
| Q |
161 |
aagtgtatcatacgtttgttatctccaaactccaaagtataccaacttgtgtgttggttaattggtttagt |
231 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
3053657 |
aagtgtaccatacgtttgttatttccaatttccaaagtataacgacttgtgtgttggttaattggtttagt |
3053727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 492
Target Start/End: Complemental strand, 3068516 - 3068435
Alignment:
| Q |
411 |
cattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttttccttaggttttctt |
492 |
Q |
| |
|
|||||||||||||||||||||| | ||| || |||| |||||||| |||||||||||||||||||| |||| ||||||||| |
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| T |
3068516 |
cattggtgattcttttactgcagataccggcaactctccatggttgctttcaccttctggtgactttgcctttggttttctt |
3068435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 250
Target Start/End: Original strand, 3046969 - 3046997
Alignment:
| Q |
222 |
ttggtttagtatgagttgaccaagtctac |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3046969 |
ttggtttagtatgagttgaccaagtctac |
3046997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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