View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1770_high_4 (Length: 237)

Name: NF1770_high_4
Description: NF1770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1770_high_4
NF1770_high_4
[»] chr4 (3 HSPs)
chr4 (1-122)||(32315735-32315856)
chr4 (64-121)||(53086180-53086237)
chr4 (31-94)||(53469161-53469225)
[»] chr3 (1 HSPs)
chr3 (1-122)||(43088722-43088843)
[»] chr2 (6 HSPs)
chr2 (1-119)||(40873545-40873663)
chr2 (8-113)||(32504903-32505011)
chr2 (20-121)||(18480108-18480211)
chr2 (20-121)||(44207466-44207569)
chr2 (8-104)||(22882288-22882385)
chr2 (58-121)||(32647327-32647388)
[»] chr1 (4 HSPs)
chr1 (20-122)||(15368628-15368730)
chr1 (1-115)||(42377888-42378004)
chr1 (58-115)||(28649593-28649650)
chr1 (10-114)||(40879306-40879412)
[»] chr7 (2 HSPs)
chr7 (1-122)||(3697250-3697371)
chr7 (19-121)||(35457343-35457449)
[»] chr5 (2 HSPs)
chr5 (64-121)||(12095240-12095297)
chr5 (35-114)||(22393550-22393631)
[»] chr6 (5 HSPs)
chr6 (1-121)||(9645622-9645744)
chr6 (1-121)||(9651639-9651761)
chr6 (8-105)||(4608539-4608637)
chr6 (44-115)||(15932604-15932677)
chr6 (44-121)||(31765089-31765168)
[»] chr8 (2 HSPs)
chr8 (58-113)||(39415470-39415525)
chr8 (58-115)||(3811637-3811694)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 32315856 - 32315735
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcgaaaaacaagataattaacaaattgtcgaattcaacattataat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32315856 actatgttgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcgaaaaacaagataattaacaaattgtcgaattcaacattataat 32315757  T
Q  101 taatagaaaaataaggcaaatg 122  Q
    ||||||||||||||||||||||    
T  32315756 taatagaaaaataaggcaaatg 32315735  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 53086180 - 53086237
Alignment:
Q  64 aagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53086180 aagataattaacaaattgtcgaattcaacattataattaatagtaaaataaggcaaat 53086237  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 53469225 - 53469161
Alignment:
Q  31 aaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacat 94  Q
    |||| ||||||||||| |||||||| |  |||||||||||||||| || |||||||||||||||||    
T  53469225 aaagtatatgtagcaa-taaatttgtggtaaaaacaagataattagcatattgtcgaattcaacat 53469161  T

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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43088722 - 43088843
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcgaaaaacaagataattaacaaattgtcgaattcaacattataat 100  Q
    |||||| |||||||| | |||||| |||| |||||| | ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||     
T  43088722 actatgttgcttttatcgtaaaaacatataaaagaaaaggtagcaagtaaatttgtgaaaaacaagataattatcaaattgtcgaattcaacatcataac 43088821  T
Q  101 taatagaaaaataaggcaaatg 122  Q
    |||||| ||| |||||||||||    
T  43088822 taatagcaaattaaggcaaatg 43088843  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 40873663 - 40873545
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcgaaaaacaagataattaacaaattgtcgaattcaacattataat 100  Q
    |||||| |||||||| | ||||||  ||| |||||||| ||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||     
T  40873663 actatgttgcttttatcgtaaaaaagtataaaagaataggtaacaagtaaatttgtgaaaaacaagataattatcaaattgtcgaattcaacatcataac 40873564  T
Q  101 taatagaaaaataaggcaa 119  Q
    |||||| ||||||||||||    
T  40873563 taatagcaaaataaggcaa 40873545  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 32505011 - 32504903
Alignment:
Q  8 tgcttttaacataaaaa-tatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattataattaat 104  Q
    |||||||| |||||||| ||||| |||||||||| | ||||||||||||    ||||||||||||||||| |||||||| || ||||||| ||| |||||    
T  32505011 tgcttttatcataaaaaatatataaaagaatatgcaacaaataaatttgttgtaaaaacaagataattaataaattgtcaaactcaacatcatatttaat 32504912  T
Q  105 agaaaaata 113  Q
    || ||||||    
T  32504911 agcaaaata 32504903  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 18480211 - 18480108
Alignment:
Q  20 aaaaatatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggc 117  Q
    ||||| |||| ||||||||  || |||||||||||| |  ||||||||||||||||| ||||||| ||| ||||||| ||| ||||||| || ||||||     
T  18480211 aaaaaaatataaaagaataaataacaaataaatttgtggtaaaaacaagataattaataaattgttgaactcaacatcatatttaatagcaatataagga 18480112  T
Q  118 aaat 121  Q
    ||||    
T  18480111 aaat 18480108  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 44207466 - 44207569
Alignment:
Q  20 aaaaatatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggc 117  Q
    ||||| |||| |||||||||| | |||||||||| | |  ||||||||||||||||| ||||||||||| | ||| | ||| ||||||| |||||||||     
T  44207466 aaaaaaatataaaagaatatgcatcaaataaattcgtggtaaaaacaagataattaataaattgtcgaactaaacgtcatacttaatagcaaaataagga 44207565  T
Q  118 aaat 121  Q
    ||||    
T  44207566 aaat 44207569  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 22882385 - 22882288
Alignment:
Q  8 tgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcgaaa--aacaagataattaacaaattgtcgaattcaacattataattaat 104  Q
    |||||||| |||||||| |||| |||||||||| |   |||||||||| ||||  |||||||||||||| ||||||||||| ||||||| ||| |||||    
T  22882385 tgcttttatcataaaaa-atataaaagaatatgcatagaataaatttgtgaaagaaacaagataattaataaattgtcgaactcaacatcatacttaat 22882288  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 32647327 - 32647388
Alignment:
Q  58 aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaaat 121  Q
    ||||||||||||||||||||||||||||| ||   || ||| ||||||||||||||||| ||||    
T  32647327 aaaaacaagataattaacaaattgtcgaactc--tatcatacttaatagaaaaataaggaaaat 32647388  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 15368628 - 15368730
Alignment:
Q  20 aaaaatatatgaaagaatatgtagcaaataaatttgcgaaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaa 119  Q
    ||||| |||| |||||||| ||||||| |||||| | ||||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||||||||    
T  15368628 aaaaaaatataaaagaataggtagcaagtaaattcgtgaaaaacaagataattatcaaattgttgaattcaacatcataactaatagcaaaataaggcaa 15368727  T
Q  120 atg 122  Q
    |||    
T  15368728 atg 15368730  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 42377888 - 42378004
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcga--aaaacaagataattaacaaattgtcgaattcaacattata 98  Q
    |||||| |||||||| |||||||| |||| |||||||| | | |||||||||||| ||  |||||||||||||||||||||||| ||| | ||| | |||    
T  42377888 actatgttgcttttatcataaaaaaatataaaagaataggcatcaaataaatttgtgataaaaacaagataattaacaaattgttgaactaaacgtcata 42377987  T
Q  99 attaatagaaaaataag 115  Q
     ||||||| ||||||||    
T  42377988 cttaatagcaaaataag 42378004  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 28649593 - 28649650
Alignment:
Q  58 aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataag 115  Q
    ||||||||| || |||||||||||||||| ||||||| ||| ||||||| ||||||||    
T  28649593 aaaaacaaggtagttaacaaattgtcgaaatcaacatcatacttaatagcaaaataag 28649650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 40879412 - 40879306
Alignment:
Q  10 cttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattataattaataga 107  Q
    |||||| |||||||| |||| |||||| | | | | |||||||||| |  ||||||||||||||||| ||||| || || ||||||| ||| |||||||     
T  40879412 cttttatcataaaaaaatataaaagaacaggcaacgaataaatttggggtaaaaacaagataattaataaattatcaaactcaacatcatatttaatagc 40879313  T
Q  108 aaaataa 114  Q
    |||||||    
T  40879312 aaaataa 40879306  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 3697250 - 3697371
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcgaaaaacaagataattaacaaattgtcgaattcaacattataat 100  Q
    |||||| |||||||| | |||  | |||| |||||||| ||||||| |||||||| ||||||| ||||||||| |||||||| ||||||||||| ||||     
T  3697250 actatgttgcttttatcgtaatgaaatataaaagaataggtagcaagtaaatttgtgaaaaaccagataattatcaaattgttgaattcaacatcataac 3697349  T
Q  101 taatagaaaaataaggcaaatg 122  Q
    |||||| |||||||||||||||    
T  3697350 taatagcaaaataaggcaaatg 3697371  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 35457449 - 35457343
Alignment:
Q  19 taaaaatatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacat--tataattaatagaaaaataa 114  Q
    |||||| |||| ||||||||||   | |||||||||| |  |||||||| |||||||||||||||| ||| |||||||  |||||||||||| |||| ||    
T  35457449 taaaaaaatataaaagaatatgcctcgaataaatttgtggtaaaaacaatataattaacaaattgttgaactcaacatcatataattaatagcaaaaaaa 35457350  T
Q  115 ggcaaat 121  Q
    || ||||    
T  35457349 ggaaaat 35457343  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 12095297 - 12095240
Alignment:
Q  64 aagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaaat 121  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12095297 aagatagttaacaaattctcgaattcaacattataattaatagaaaaataaggcaaat 12095240  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 22393550 - 22393631
Alignment:
Q  35 aatatgtagcaaataaatttg-cg-aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataa 114  Q
    |||||| | |||||||||||| || ||||||||||||||||| || |||||||| ||||||| ||| ||||||  |||||||    
T  22393550 aatatgcaacaaataaatttgtcgtaaaaacaagataattaataagttgtcgaactcaacatcatacttaataacaaaataa 22393631  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9645744 - 9645622
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattata 98  Q
    |||||| |||||| | ||| |||| |||| |||||||| |   |||||||||||| |  ||||||||||||||||||||||||||||| | || ||||||    
T  9645744 actatgttgctttaatcatgaaaaaatataaaagaataggcgacaaataaatttgtggtaaaaacaagataattaacaaattgtcgaacttaaaattata 9645645  T
Q  99 attaatagaaaaataaggcaaat 121  Q
     ||||||| |||| |||| ||||    
T  9645644 cttaatagcaaaagaaggaaaat 9645622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9651761 - 9651639
Alignment:
Q  1 actatgctgcttttaacataaaaatatatgaaagaatatgtagcaaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattata 98  Q
    |||||| |||||| | ||| |||| |||| |||||||| |   |||||||||||| |  ||||||||||||||||||||||||||||| | || ||||||    
T  9651761 actatgttgctttaatcatgaaaaaatataaaagaataggcgacaaataaatttgtggtaaaaacaagataattaacaaattgtcgaacttaaaattata 9651662  T
Q  99 attaatagaaaaataaggcaaat 121  Q
     ||||||| |||| |||| ||||    
T  9651661 cttaatagcaaaagaaggaaaat 9651639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 4608539 - 4608637
Alignment:
Q  8 tgcttttaacataaaaatatatgaaagaatatgtagcaaataaatt--tgcgaaaaacaagataattaacaaattgtcgaattcaacattataattaata 105  Q
    |||||||| ||||||||||||  |||||||| | | ||||||||||  || |||||||||||||||||||||| |   ||||||||||| ||||||||||    
T  4608539 tgcttttatcataaaaatataa-aaagaataggcatcaaataaattgttgggaaaaacaagataattaacaaaatcctgaattcaacatcataattaata 4608637  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 15932677 - 15932604
Alignment:
Q  44 caaataaatttgcg--aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataag 115  Q
    |||||||||||| |  ||||| ||||||||||||||||||||||| | || |||||||||| | ||||||||||    
T  15932677 caaataaatttgtggtaaaaataagataattaacaaattgtcgaacttaatattataattatttgaaaaataag 15932604  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 31765089 - 31765168
Alignment:
Q  44 caaataaatttgcga--aaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataaggcaaat 121  Q
    |||||||||||| ||  |||| ||||||||||| ||||||||||| | |||||  || ||||||| ||||||||| ||||    
T  31765089 caaataaatttgtgataaaaataagataattaataaattgtcgaactaaacatcgtacttaatagcaaaataaggaaaat 31765168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 39415525 - 39415470
Alignment:
Q  58 aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaata 113  Q
    ||||||||||||||||||||||||||||| | ||||| ||| ||||||| ||||||    
T  39415525 aaaaacaagataattaacaaattgtcgaactaaacatcatacttaatagcaaaata 39415470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 3811694 - 3811637
Alignment:
Q  58 aaaaacaagataattaacaaattgtcgaattcaacattataattaatagaaaaataag 115  Q
    ||||| ||||||||||||||||| | ||||| ||||| ||| ||||||| ||||||||    
T  3811694 aaaaataagataattaacaaattattgaatttaacatcatacttaatagcaaaataag 3811637  T

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