View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1770_low_2 (Length: 461)
Name: NF1770_low_2
Description: NF1770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1770_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 34952098 - 34951677
Alignment:
| Q |
12 |
catcatcaggggtttttgtagggatcagatgcatgaaaactttacaaattgtggcagtgaagcttttggaactttttcttattctcatttcatcactttg |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34952098 |
catcgtcaggggtttttgtagggatcagatgcatgaaaactttacaaattgtggcagtgaagcttttggaactttttcttattctcatttcatcactttg |
34951999 |
T |
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| Q |
112 |
gtttactttgattctggtgcaaagcataagttctcttttattgttaagagtttgagtctctcttaatctttcactttcatttnnnnnnnn-ttgtgaatg |
210 |
Q |
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| T |
34951998 |
gtttactttgattctggtgcaaagcataagttctcttttattgttaagagtttgagtctctcttaatctttcactttcatttaaaaaaaaattgtgaatg |
34951899 |
T |
|
| Q |
211 |
agttttatgctttgcttatagaagatattttaatttttgagaaaaatattgtataaaataaaagggagagataagtttatctttgcattgatttcaattt |
310 |
Q |
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| T |
34951898 |
agttttatgctttgcttatagaagatattttaatttttaagaaaaattttgtataaaataaaagggagagataagtttatcattgcattgatttcaattt |
34951799 |
T |
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| Q |
311 |
caaaatatgttttaagcatggatcaagatgcaccttctaataaaagatactacttctgttatttttagttgttgttttaagattatttgcacataccaac |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34951798 |
caaaatatgttttaagcatggatcaagatgcaccttctaataaaagatactacttctgttatttttaattgttgttttaagattatttgcacataccaac |
34951699 |
T |
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| Q |
411 |
aa-aaaattatttattatctca |
431 |
Q |
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| T |
34951698 |
aaaaaaattatttattatctca |
34951677 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 31394965 - 31395012
Alignment:
| Q |
108 |
tttggtttactttgattctggtgcaaagcataagttctcttttattgt |
155 |
Q |
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| T |
31394965 |
tttggtttactttgattcttgtgcaaagtataagttcactttcattgt |
31395012 |
T |
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