View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1770_low_4 (Length: 237)
Name: NF1770_low_4
Description: NF1770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1770_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 19329459 - 19329329
Alignment:
| Q |
5 |
attgctacaagatatataaa-cttaaactcatgaaacatattcttaccattctccgaaacccgggtgacagagaaataggcctccctatgaactttcggg |
103 |
Q |
| |
|
|||||||||||||||||||| || |||||| |||||||||| |||||| ||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
19329459 |
attgctacaagatatataaaactaaaactcctgaaacatatccttaccgttctctgaaactcggatgacagagaaataggcctccctatgaacttgcggg |
19329360 |
T |
|
| Q |
104 |
tatttctcatataccaatccatgtactcgct |
134 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
19329359 |
taattctcatataccaatccatgtactcgct |
19329329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 19467654 - 19467557
Alignment:
| Q |
28 |
aaactcatgaaacatattcttaccattctccgaaacccgggtgacagagaaataggcctccctatgaactttcgggtatttctcatataccaatccat |
125 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||| || |||||||||||||||||||||| || | |||||||||| |||||||||||| |
|
|
| T |
19467654 |
aaactcatgaaacatatccttaccattctcagaaactcggaggatggagaaataggcctccctatgaatttgcacgtatttctcacataccaatccat |
19467557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 19467524 - 19467459
Alignment:
| Q |
135 |
atctaagaacaaatggaaatcaatcgtgaaacatttaggtgaaaataagtccaacaattcaaaatg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||||| | ||||||| |
|
|
| T |
19467524 |
atctaagaacaaaaggaaatcaatcgtgcaacatttaggtgaaagtaactccaacattgcaaaatg |
19467459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University