View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17710_high_1 (Length: 425)
Name: NF17710_high_1
Description: NF17710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17710_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 39084683 - 39084290
Alignment:
| Q |
13 |
attatacttgctcaaaacagtggcagagttggtttctcaagttagaatcagaatgaaaaacaaaacatcactatgtccaccctttctaggagggttctga |
112 |
Q |
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| T |
39084683 |
attatacttgctcaaaacagtggcagagttggtttctcaagttagaatcagaatgaaaaacaaaacatcactatgtccaccctttctaggaggctcctga |
39084584 |
T |
|
| Q |
113 |
taggcctcattaacaaacaaaaagatccaagcgagcataaatcagaagaccaaaatttaagtgtctatcatcttgattttcaagcagtggcaaggaaaga |
212 |
Q |
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| T |
39084583 |
taggcctcattaacaaacaaaaagatccaagcgagcataaatcagaagaccaaaatttaagtgtctatcatcttgattttcaagcagtggcaaggaaaga |
39084484 |
T |
|
| Q |
213 |
atcatgacaacaatctcttgagaaatacttagtttaacatnnnnnnncaggcttttggtcaaatgttttgggagctcacgcatcacctgttatattaact |
312 |
Q |
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| T |
39084483 |
atcatgacaacaatctcttgagaaatacttagtttaacataaaaaaacagacttttggtcaaatgttttgggagctcacgcatcacctgttatattaact |
39084384 |
T |
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| Q |
313 |
ctaaaactacccttatagtctttctcttaaataataatcacgaacttcaaaatcatgacggagaacctaataagagaacaatggatgttgtgaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39084383 |
ctaaaactacccttatagtctttctcttaaataataatcacgaacttcaaaatcatgacggagaaactaataagagaacaatggatgttgtgaa |
39084290 |
T |
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